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Gene Set Enrichment Analysis using Variant Density instead of Expression levels?
R GSEA Density Enrichment
updated 5.0 years ago by 20 • written 8.4 years ago by ▴ 190
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4.1k
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Comment: C: Where/how can I download all coding sequences ( CDS ) of human genome?
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 190
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Statistical Genetics - What information is required for haplotype phasing in a novel, admixed population?
admixture phasing haplotype exome
6.6 years ago by anp375 ▴ 190
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Answer: A: p-adjusted value to find out DE genes.
6.9 years ago by anp375 ▴ 190
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7.6k
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Answer: A: Interpreting GSEA results
6.9 years ago by anp375 ▴ 190
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Answer: A: Beagle to plink
6.9 years ago by anp375 ▴ 190
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1.5k
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Tool for Pathway Analysis on SKAT results
SKAT DNA-Seq Exome Pathway Analysis
6.9 years ago by anp375 ▴ 190
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2.3k
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Comment: C: How can I remove Indels from a VCF file that are actually microsatellite variant
7.1 years ago by anp375 ▴ 190
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2
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2.3k
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How can I remove Indels from a VCF file that are actually microsatellite variants?
microsatellite indel
updated 7.1 years ago by 164k • written 7.1 years ago by ▴ 190
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Comment: C: What are the typical IBD PIHAT values calculated by PLINK for duplicate samples?
7.1 years ago by anp375 ▴ 190
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2
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7.5k
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What are the typical IBD PIHAT values calculated by PLINK for duplicate samples?
plink IBD
updated 7.1 years ago by ★ 2.1k • written 7.1 years ago by ▴ 190
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8.3k
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Comment: C: TruSeq Exome Enrichment Kit Targeted Regions BED File
7.2 years ago by anp375 ▴ 190
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1.6k
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Comment: C: brain scan databases
7.2 years ago by anp375 ▴ 190
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1.4k
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Is there a phasing algorithm or tool that first determines undeniably present haplotypes?
phasing hardy weinberg haplotype beagle
7.3 years ago by anp375 ▴ 190
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1.5k
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Comment: C: How do you interpret the presence of only one homozygote in a population, with n
7.6 years ago by anp375 ▴ 190
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Comment: C: How do you interpret the presence of only one homozygote in a population, with n
7.6 years ago by anp375 ▴ 190
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1
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3.9k
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Answer: A: How to calculate polygenic hazard score (PHS)?
7.6 years ago by anp375 ▴ 190
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4
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1.5k
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How do you interpret the presence of only one homozygote in a population, with no heterozygotes?
zygosity biology somatic germline
7.6 years ago by anp375 ▴ 190
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2.8k
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Comment: C: computational tools for univariate and multivariate GWAS using quantitative trai
7.7 years ago by anp375 ▴ 190
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1
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2.8k
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Answer: A: computational tools for univariate and multivariate GWAS using quantitative trai
7.7 years ago by anp375 ▴ 190
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1.5k
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Comment: C: Would a complete lack of heterozygotes in a population indicate the presence of
7.8 years ago by anp375 ▴ 190
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2
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Would a complete lack of heterozygotes in a population indicate the presence of a recessive allele?
genetics zygosity
updated 7.8 years ago by 20k • written 7.8 years ago by ▴ 190
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1.4k
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Answer: A: Specific questions about pathway analysis
7.8 years ago by anp375 ▴ 190
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1
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4.0k
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Answer: A: Examining Principal Components of Genetic Ancestry in R
7.9 years ago by anp375 ▴ 190
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6.7k
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Answer: A: PCA of a genotype matrix
7.9 years ago by anp375 ▴ 190
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1
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3.6k
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Using VEP: Variant Effect Predictor, how do I get the 1000G global Allele Frequency of my alternate alleles specifically?
VEP Variant Effect Predictor Annovar
updated 7.9 years ago by ▴ 570 • written 8.1 years ago by ▴ 190
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3
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2.7k
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How do I get GO term annotations using VEP?
ensembl GO VEP gene ontology
updated 3.1 years ago by ★ 2.4k • written 8.1 years ago by ▴ 190
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2.6k
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Answer: A: Hardy-Weinberg Equilbrium for multiple loci
8.0 years ago by anp375 ▴ 190
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2.6k
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Answer: A: how can I convert a table of EXON counts (coordinate) to a table of GENE or TRAN
8.0 years ago by anp375 ▴ 190
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2.0k
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How do I get Genbank files by using wiki gene ids in bioperl?
bioperl genbank
updated 22 months ago by 44k • written 9.5 years ago by ▴ 190
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4.3k
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Answer: A: Calculating Tajima's D using R and VCF data from 1000 genomes
8.1 years ago by anp375 ▴ 190
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0
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2.5k
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Are GERP RS scores for a variant specific for the alternate allele or just the region?
GERP RS Annovar
8.2 years ago by anp375 ▴ 190
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0
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1.2k
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For anyone who has used SKAT for association with genes as sets
skat association SNP
8.2 years ago by anp375 ▴ 190
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1.7k
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Answer: A: Download Genes according to the number of Introns
8.2 years ago by anp375 ▴ 190
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0
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1.8k
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What causes missing GERP scores in Annovar results?
Annovar GERP
8.2 years ago by anp375 ▴ 190
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0
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2.4k
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Comment: C: Given loci coordinates, is it possible to identify gene name from hg19.2bit file
8.4 years ago by anp375 ▴ 190
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1
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13k
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Answer: A: Gene length database
8.4 years ago by anp375 ▴ 190
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1
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2.4k
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Answer: A: Given loci coordinates, is it possible to identify gene name from hg19.2bit file
8.4 years ago by anp375 ▴ 190
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1
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2.4k
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Comment: C: Given loci coordinates, is it possible to identify gene name from hg19.2bit file
8.4 years ago by anp375 ▴ 190
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1
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2.4k
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Answer: A: For multisample VCF, should I filter the variants based on allele depth (AD) or
8.4 years ago by anp375 ▴ 190
2
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4.6k
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How should I calculate the variant density, per kb for a gene, for two different groups in a case/control study?
density case/control
8.4 years ago by anp375 ▴ 190
2
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5
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2.8k
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Ingenuity Pathway Analysis by Variant Density?
IPA Pathway Density Variant
8.4 years ago by anp375 ▴ 190
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0
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2.8k
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Comment: C: Ingenuity Pathway Analysis by Variant Density?
8.4 years ago by anp375 ▴ 190
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1
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2.8k
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Comment: C: Ingenuity Pathway Analysis by Variant Density?
8.4 years ago by anp375 ▴ 190
1
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3.2k
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Comment: C: Best way to spend money to learn Bioinformatics
8.4 years ago by anp375 ▴ 190
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0
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2.2k
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Comment: C: How do I get the lengths of different regions targeted by the Nextera expanded r
8.5 years ago by anp375 ▴ 190
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1.8k
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Comment: C: in silico study of enzyme-dye interaction
8.5 years ago by anp375 ▴ 190
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2
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2.2k
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How do I get the lengths of different regions targeted by the Nextera expanded rapid capture exome kit for b37?
exome nextera lengths
updated 8.5 years ago by ★ 2.1k • written 8.5 years ago by ▴ 190
0
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1
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1.8k
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Answer: A: in silico study of enzyme-dye interaction
8.5 years ago by anp375 ▴ 190
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0
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2.7k
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Answer: A: Extracting and joining exons from multiple sequence alignments using PERL
8.6 years ago by anp375 ▴ 190
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