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2
votes
1
reply
860
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Randomly reduce size of reads but preserving the distribution
sequencing biostatistics
updated 2.2 years ago by 8.7k • written 2.2 years ago by ▴ 70
0
votes
0
replies
1.3k
views
Comment: Comment: Calculating fragment start and end in python
2.7 years ago by mhasa006 ▴ 70
0
votes
0
replies
1.3k
views
Comment: Comment: Calculating fragment start and end in python
2.7 years ago by mhasa006 ▴ 70
0
votes
1
reply
1.3k
views
Comment: Comment: Calculating fragment start and end in python
2.7 years ago by mhasa006 ▴ 70
0
votes
6
replies
1.3k
views
Calculating fragment start and end in python
python insert fragment
2.7 years ago by mhasa006 ▴ 70
3
votes
1
reply
4.2k
views
Write SAM file manually with pysam
bam python sam pysam alignment
updated 2.9 years ago by 15k • written 2.9 years ago by ▴ 70
2
votes
1
reply
1.1k
views
Discrepancy in pysam fetching region
pysam python fetch bam
3.0 years ago by mhasa006 ▴ 70
2
votes
0
replies
1.1k
views
Answer: Answer: Discrepancy in pysam fetching region
3.0 years ago by mhasa006 ▴ 70
0
votes
0
replies
2.6k
views
Comment: Comment: Write free text comment with @CO in BAM file
4.2 years ago by mhasa006 ▴ 70
0
votes
1
reply
2.6k
views
Comment: Comment: Write free text comment with @CO in BAM file
4.2 years ago by mhasa006 ▴ 70
0
votes
1
reply
2.6k
views
Comment: Comment: Write free text comment with @CO in BAM file
4.2 years ago by mhasa006 ▴ 70
0
votes
2
replies
2.6k
views
Comment: Comment: Write free text comment with @CO in BAM file
4.2 years ago by mhasa006 ▴ 70
0
votes
12
replies
2.6k
views
Write free text comment with @CO in BAM file
BAM hstjdk java
4.2 years ago by mhasa006 ▴ 70
2
votes
1
reply
1.3k
views
Soft Clipped read 3' end position
BAM htsjdk java
updated 4.5 years ago by ★ 2.9k • written 4.5 years ago by ▴ 70
1
vote
1
reply
825
views
Reading not properly paired reads from a BAM file
BAM java SAMReader
updated 4.7 years ago by 166k • written 4.7 years ago by ▴ 70
0
votes
0
replies
3.6k
views
Comment: C: VCF file REF Column outputs all 'N'
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 70
2
votes
1
reply
2.3k
views
Cancer data download with normal sample
cancer tcga cancer data normal
updated 6.4 years ago by 89k • written 6.4 years ago by ▴ 70
0
votes
5
replies
1.6k
views
BLAST against cancer genome
cancer BLAST gene genome
updated 6.6 years ago by 20 • written 6.6 years ago by ▴ 70
0
votes
1
reply
1.6k
views
Comment: C: BLAST against cancer genome
6.6 years ago by mhasa006 ▴ 70
0
votes
1
reply
1.6k
views
Comment: C: BLAST against cancer genome
6.6 years ago by mhasa006 ▴ 70
13
votes
14
replies
9.6k
views
Extract gff of a particular chromosome
gff3 chromosome IGV
updated 6.7 years ago by ▴ 10 • written 9.0 years ago by ▴ 70
1
vote
1
reply
1.3k
views
Efficient processing of a read and its mate from bam file
BAM htsjdk samtools java SAM
updated 6.8 years ago by 16k • written 6.8 years ago by ▴ 70
2
votes
1
reply
1.7k
views
Extract the mate pair information with htsjdk
BAM samtools htsjdk
updated 6.9 years ago by 166k • written 6.9 years ago by ▴ 70
2
votes
1
reply
2.0k
views
Extract the SAM File header section
SAM samtools htsjdk bam java
updated 6.9 years ago by 166k • written 6.9 years ago by ▴ 70
0
votes
0
replies
972
views
Forum: Cancer related problem with sequencing data and deep neural network
deep-neural-network sequence cancer RNA-Seq
updated 2.1 years ago by 45k • written 7.2 years ago by ▴ 70
3
votes
1
reply
2.0k
views
OG/Fusion, TSG/Fusion in CGC
cancer cgc og tsg
updated 7.4 years ago by 27k • written 7.4 years ago by ▴ 70
1
vote
0
replies
3.6k
views
Comment: C: Cancer research for computer science student
7.6 years ago by mhasa006 ▴ 70
10
votes
8
replies
3.6k
views
6 follow
Forum: Cancer research for computer science student
cancer research computer-science
updated 20 months ago by • 0 • written 7.6 years ago by ▴ 70
0
votes
0
replies
4.7k
views
Comment: C: Where To Find A Good Estimate Of The Background Mutation Rate In Rattus Norvegic
7.7 years ago by mhasa006 ▴ 70
0
votes
0
replies
3.0k
views
Comment: C: RSEM output file format
7.7 years ago by mhasa006 ▴ 70
2
votes
2
replies
3.0k
views
RSEM output file format
rsem RNA-Seq differential expression
updated 7.7 years ago by ▴ 840 • written 7.7 years ago by ▴ 70
0
votes
1
reply
1.8k
views
Comment: C: Dataset preparation for driver/passenger gene discovery
7.8 years ago by mhasa006 ▴ 70
2
votes
4
replies
1.8k
views
Dataset preparation for driver/passenger gene discovery
snv SNP gene cancer TCGA
updated 7.8 years ago by 89k • written 7.8 years ago by ▴ 70
4
votes
4
replies
2.7k
views
Nucleosome positioning dataset
dataset nucleosome nucleosome positioning
updated 2.7 years ago by 45k • written 9.8 years ago by ▴ 70
1
vote
2
replies
4.5k
views
Pulse information of PacBio data
Methylation PacBio
updated 2.6 years ago by 45k • written 10.0 years ago by ▴ 70
1
vote
3
replies
3.6k
views
VCF file REF Column outputs all 'N'
vcf SNP
updated 2.9 years ago by 45k • written 9.6 years ago by ▴ 70
0
votes
0
replies
2.7k
views
Comment: Comment: Nucleosome positioning dataset
updated 2.7 years ago by 45k • written 9.8 years ago by ▴ 70
1
vote
0
replies
2.7k
views
Scoring matrix of 3 sequence alignment
sequencing multiple-sequencing
updated 2.4 years ago by 45k • written 10.1 years ago by ▴ 70
7
votes
5
replies
3.9k
views
PacBio data assembly with Celera
PacBio Celera Assembly
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 70
0
votes
1
reply
3.9k
views
Comment: C: PacBio data assembly with Celera
10.0 years ago by mhasa006 ▴ 70
40 results • Page 1 of 1
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