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3
votes
0
replies
3.1k
views
Answer:
A: Are indel realignment and base recalibration necessary for RNAseq data?
8.7 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
8.2k
views
Comment:
C: What is the reason for most software errors in Bioinformatics according to you?
8.8 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
8.2k
views
Answer:
A: What is the reason for most software errors in Bioinformatics according to you?
8.8 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
2.5k
views
Answer:
A: Managing large data sets
8.8 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
2.5k
views
Answer:
A: Managing large data sets
8.8 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
1.9k
views
Comment:
C: File Format - Fasta
8.8 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
1.6k
views
Comment:
C: How to edit a mapped genome?
8.8 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
1.6k
views
Answer:
A: How to edit a mapped genome?
8.8 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
9.1k
views
Comment:
C: Filtering of low coverage variants from VCF
8.8 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
1
reply
9.1k
views
Answer:
A: Filtering of low coverage variants from VCF
8.8 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
8.1k
views
Comment:
C: Amzon EC2 for bioinformatics, genomics, NGS analysis
8.8 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
8.4k
views
Answer:
A: Variant caller for low frequency variants
8.8 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
5.5k
views
Answer:
A: coverageBed: what am I doing wrong?
8.8 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
2.7k
views
Comment:
C: GalaxyProject, why and why not?
8.8 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
9.7k
views
Comment:
C: Bioinformatics Mobile App
8.8 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
9.7k
views
Comment:
C: Bioinformatics Mobile App
8.8 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
2.9k
views
Comment:
C: Any way to differentiate from a BAM which minor build human reference genome was
8.8 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
5.7k
views
Comment:
C: coverageBed problem: bam contains chromosome while query file does not
8.9 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
5.7k
views
Comment:
C: coverageBed problem: bam contains chromosome while query file does not
8.9 years ago by
harold.smith.tarheel
★ 5.0k
3
votes
0
replies
3.0k
views
Answer:
A: Huge difference in BWA mapping times
8.9 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
5.7k
views
Answer:
A: coverageBed problem: bam contains chromosome while query file does not
8.9 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
1.3k
views
Answer:
A: difference between data sets in alignment rate
8.9 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
3.7k
views
Comment:
C: Generating Read Length?
8.9 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
2
replies
4.9k
views
Comment:
C: How to find sequence patterns in genome?
8.9 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
1
reply
2.8k
views
Answer:
A: Identify sequencing adaptor contamination programatically
8.9 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
12k
views
Comment:
C: How to properly merge multiple runs into one bam file ?
8.9 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
12k
views
Comment:
C: How to properly merge multiple runs into one bam file ?
8.9 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
2.5k
views
Answer:
A: How to convert SNP genome positions to variant identifiers and genome annotation
8.9 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
0
replies
8.1k
views
Answer:
A: Stuck creating reference genome with STAR
8.9 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
13k
views
Comment:
C: MarkDuplicates memory issue
9.0 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
13k
views
Comment:
C: MarkDuplicates memory issue
9.0 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
1.6k
views
Comment:
C: How high/low is library construction efficiency?
9.0 years ago by
harold.smith.tarheel
★ 5.0k
3
votes
1
reply
1.6k
views
Answer:
A: How high/low is library construction efficiency?
9.0 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
2.9k
views
Answer:
A: How to compare the alignment quality of two or more mapping software
9.0 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
4.5k
views
Comment:
C: Many 0 length reads after trimming
9.0 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
3.7k
views
Comment:
C: Align metagenomic shotgun sequencing reads to primers
9.0 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
2.4k
views
Answer:
A: What variant callers are faster than samtools?
9.0 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
1
reply
4.3k
views
Comment:
C: reverse complemented reads mapping
9.0 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
4.9k
views
Answer:
A: Plasmid comparison tool
9.0 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
1.8k
views
Answer:
A: Find restriction enzyme combo that cuts every 2-3kb best
9.0 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
22k
views
Comment:
C: Jellyfish-Kmer, Genome Size Estimation
9.0 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
7.1k
views
Answer:
A: IGV not showing the variants detected by GATK and Varscan
9.1 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
8.4k
views
Comment:
Comment: pros- and cons- : programming skills vs. GUI
updated 3.7 years ago by
Ram
44k • written 9.1 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
8.4k
views
Comment:
Comment: pros- and cons- : programming skills vs. GUI
updated 3.7 years ago by
Ram
44k • written 9.1 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
8.4k
views
Comment:
Comment: pros- and cons- : programming skills vs. GUI
updated 3.7 years ago by
Ram
44k • written 9.1 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
8.4k
views
Comment:
Comment: pros- and cons- : programming skills vs. GUI
updated 3.7 years ago by
Ram
44k • written 9.1 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
5.1k
views
Comment:
C: Find closest gene to chromosome location
9.1 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
2
replies
8.4k
views
Comment:
Comment: pros- and cons- : programming skills vs. GUI
updated 3.7 years ago by
Ram
44k • written 9.1 years ago by
harold.smith.tarheel
★ 5.0k
3
votes
0
replies
2.8k
views
Answer:
A: What factors impact the total number reads produced by different sequencing inst
9.1 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
3.8k
views
Comment:
C: Extract consensus gene sequence (from gff file) from bam file
9.1 years ago by
harold.smith.tarheel
★ 5.0k
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