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0
votes
1
reply
4.3k
views
Answer:
A: A very short gene with very high TPM
6.9 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
1
reply
4.8k
views
Answer:
A: vcf files: counting number of variants in genomic windows of chosen size
7.0 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
6.4k
views
Comment:
C: SNP Analysis of bacterial genomes
7.0 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
1
reply
3.1k
views
Answer:
C: Bedtools intersect returns 0, intersections present on IGV
7.0 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
3.3k
views
Comment:
C: Can phasing or pre-phase during basecall cause indel?
7.0 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
0
replies
3.3k
views
Comment:
C: Can phasing or pre-phase during basecall cause indel?
7.0 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
0
replies
2.2k
views
Answer:
A: Why "Motile sperm domain-containing protein 2" has nothing to do with "sperm"?
7.1 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
2.3k
views
Comment:
C: mpileup for creating a consensus sequence
7.2 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
0
replies
3.1k
views
Answer:
A: Nucleotide coverage if >5 reads
7.2 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
1
reply
4.2k
views
Answer:
A: Is there any disease mainly caused by underexpression or overexpression of some
7.2 years ago by
harold.smith.tarheel
★ 5.0k
3
votes
0
replies
12k
views
Answer:
A: Convert SNPs from GrCh38 to 37
7.3 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
2.6k
views
Comment:
C: retrospective trio analysis from WGS SNPs
7.3 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
2.6k
views
Comment:
C: retrospective trio analysis from WGS SNPs
7.3 years ago by
harold.smith.tarheel
★ 5.0k
9
votes
7
replies
2.6k
views
retrospective trio analysis from WGS SNPs
pedigree
SNP
trio
variant
lineage
updated 7.3 years ago by
andrew.j.skelton73
6.6k • written 7.3 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
1.8k
views
How to calculate genetic diversity in inbred population
population structure
variants
statistics
7.3 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
1.5k
views
Answer:
A: How to do a local denovo assembly including unmapped paired reads for many sampl
7.3 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
0
replies
2.5k
views
Answer:
A: Finding of origin of replication in a bacterial Genome
7.4 years ago by
harold.smith.tarheel
★ 5.0k
4
votes
1
reply
2.6k
views
Answer:
A: Differentiating between chromosomal and plasmid DNA
7.4 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
2.9k
views
Answer:
A: Get one maximum UTR per gene
7.4 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
1.3k
views
Comment:
C: software for multiple phenotype-to-genotype associations
7.4 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
2
replies
1.3k
views
software for multiple phenotype-to-genotype associations
SNP
phenotype association
7.4 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
2.1k
views
Comment:
C: Lack of early variants
7.5 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
2.1k
views
Answer:
A: Lack of early variants
7.5 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
2.1k
views
Comment:
C: Inverted base and amino acid change in Annovar
7.5 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
2.1k
views
Comment:
C: Inverted base and amino acid change in Annovar
7.5 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
2.1k
views
Comment:
C: GATK: SNP coverage too high?
7.5 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
1
reply
2.1k
views
Answer:
A: GATK: SNP coverage too high?
7.5 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
0
replies
1.5k
views
Comment:
C: Best approach to quantify specific bacteria strain
7.5 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
2.1k
views
Answer:
A: Inverted base and amino acid change in Annovar
7.5 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
6.5k
views
Comment:
C: unexpectedly low speed of STAR aligner
7.5 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
6.5k
views
Comment:
C: unexpectedly low speed of STAR aligner
7.5 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
1.7k
views
Comment:
C: Is there a program that can predict or accurately guess tumour stage from inform
7.5 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
3.0k
views
Comment:
C: FastQC low %A in per base sequence content
7.5 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
1
reply
2.8k
views
Answer:
A: Reality check: insertion v duplication
7.5 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
2
replies
3.0k
views
Answer:
A: FastQC low %A in per base sequence content
7.5 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
2.1k
views
Answer:
A: large number of unusual SNPs from WGS data (C. elegans)
7.5 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
3.5k
views
Comment:
C: How to know a RNA-seq is polyA or total-RNA-seq in GEO?
7.5 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
3.5k
views
Comment:
C: How to know a RNA-seq is polyA or total-RNA-seq in GEO?
7.5 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
1.8k
views
Answer:
A: Database with gene regulatory interactions for C.elegans?
7.6 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
2.6k
views
Comment:
C: How are distances between clusters in Illumina sequencing (resp. bridge PCR) ach
7.6 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
0
replies
6.2k
views
Comment:
C: MiSeq reagent kit version 3 : bad reads qualities
7.7 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
1
reply
6.2k
views
Comment:
C: MiSeq reagent kit version 3 : bad reads qualities
7.7 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
2
replies
6.2k
views
Comment:
C: MiSeq reagent kit version 3 : bad reads qualities
7.7 years ago by
harold.smith.tarheel
★ 5.0k
3
votes
1
reply
2.5k
views
Answer:
A: Any comparisons of read length for variant calling?
7.7 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
2.4k
views
Answer:
A: How to split Double or Multiple Nucleotide Polymorphisms (DNP) into Single Nucle
7.7 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
1.4k
views
Comment:
C: HTseq report 80% of reads no feature
7.7 years ago by
harold.smith.tarheel
★ 5.0k
2
votes
0
replies
2.2k
views
Comment:
C: Drosophila melanogaster assembly
7.7 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
2
replies
16k
views
Comment:
C: Illumina paired-end reads R1 and R2 mixed together?
7.7 years ago by
harold.smith.tarheel
★ 5.0k
1
vote
1
reply
3.9k
views
Answer:
A: Use egrep on only one column
7.7 years ago by
harold.smith.tarheel
★ 5.0k
0
votes
0
replies
1.5k
views
Answer:
A: How to extract the numerical expression values for plotting time series curves f
7.8 years ago by
harold.smith.tarheel
★ 5.0k
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