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11
votes
11
replies
4.4k
views
7 follow
CNVKIT import errors
cnvkit cnv python linux
updated 2.1 years ago by 147k • written 6.8 years ago by ▴ 270
0
votes
0
replies
86k
views
Comment: C: Piping With Samtools, Bwa And Bedtools
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 270
2
votes
2
replies
6.1k
views
Answer: A: How can I add OMIM and HGMD data file on action right away to my VCF file?
updated 5.0 years ago by 44k • written 8.9 years ago by ▴ 270
2
votes
0
replies
5.1k
views
Answer: C: Replace vcf in-house variant IDs with dnSNP variant IDs
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 270
0
votes
0
replies
5.5k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 270
0
votes
0
replies
5.5k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 270
0
votes
1
reply
5.5k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 270
0
votes
0
replies
5.5k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 270
0
votes
0
replies
5.5k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 270
0
votes
0
replies
5.5k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 270
17
votes
9
replies
12k
views
Help with understanding CNVkit output
cnvkit cnv cancer ngs
updated 5.0 years ago by ▴ 10 • written 8.7 years ago by ▴ 270
16
votes
12
replies
7.1k
views
Annotation of Structural Variants and CNVs
annotation structural variants cnv ngs cancer
updated 5.5 years ago by • 0 • written 8.7 years ago by ▴ 270
0
votes
0
replies
4.8k
views
Comment: C: MAGERI: a software tool for calling rare variants and detecting circulating tumo
5.8 years ago by alons ▴ 270
0
votes
1
reply
4.8k
views
Comment: A: MAGERI: a software tool for calling rare variants and detecting circulating tumo
5.8 years ago by alons ▴ 270
0
votes
1
reply
12k
views
Comment: C: Help with understanding CNVkit output
updated 6.2 years ago by 44k • written 8.7 years ago by ▴ 270
0
votes
1
reply
12k
views
Comment: C: Help with understanding CNVkit output
updated 6.2 years ago by 44k • written 8.7 years ago by ▴ 270
0
votes
0
replies
13k
views
Comment: C: annotation of SV (structural variants)
6.8 years ago by alons ▴ 270
0
votes
1
reply
13k
views
Comment: C: annotation of SV (structural variants)
6.8 years ago by alons ▴ 270
0
votes
0
replies
4.4k
views
Comment: C: CNVKIT import errors
6.8 years ago by alons ▴ 270
0
votes
0
replies
4.4k
views
Comment: C: CNVKIT import errors
6.8 years ago by alons ▴ 270
18
votes
23
replies
5.5k
views
9 follow
Lack of consensus between NGS & Sanger sequencing on indels/mutations
Sanger NGS variant-calling BWA-MEM indel
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 270
4
votes
3
replies
2.3k
views
Variant calling step order question: base recalibration & mark duplicates, which is first?
NGS variant calling cancer pipeline
updated 7.3 years ago by 20k • written 7.3 years ago by ▴ 270
4
votes
1
reply
5.5k
views
Filter/Annotate VCF with dbSNP during variant calling workflow
dbSNP vcf bam variant-calling ngs
updated 24 months ago by 44k • written 9.4 years ago by ▴ 270
2
votes
2
replies
3.8k
views
Freebayes tumor vs. normal inquiry
SNP freebayes ngs tumor
updated 8.2 years ago by ▴ 20 • written 8.5 years ago by ▴ 270
0
votes
0
replies
3.3k
views
Answer: A: Cancer CNV workflow
8.5 years ago by alons ▴ 270
1
vote
1
reply
7.1k
views
Comment: C: Annotation of Structural Variants and CNVs
8.5 years ago by alons ▴ 270
0
votes
1
reply
7.1k
views
Comment: C: Annotation of Structural Variants and CNVs
8.6 years ago by alons ▴ 270
1
vote
0
replies
11k
views
Comment: C: bwa mem seq and Segmentation fault (core dumped)
8.6 years ago by alons ▴ 270
1
vote
1
reply
2.5k
views
Databases and annotation of translocations
translocations ngs cancer databases SV
updated 8.6 years ago by ★ 4.0k • written 8.6 years ago by ▴ 270
1
vote
0
replies
2.2k
views
Comment: C: Variant annotation tool
8.6 years ago by alons ▴ 270
2
votes
0
replies
2.2k
views
Answer: A: Variant annotation tool
8.6 years ago by alons ▴ 270
0
votes
0
replies
2.9k
views
Answer: A: Fix FoxG1 deletion in my son using CRISPR
8.6 years ago by alons ▴ 270
0
votes
0
replies
3.7k
views
Comment: C: Can I bulid a new reference for bwa ?
8.7 years ago by alons ▴ 270
1
vote
1
reply
3.7k
views
Answer: A: Can I bulid a new reference for bwa ?
8.7 years ago by alons ▴ 270
0
votes
1
reply
7.1k
views
Comment: C: Annotation of Structural Variants and CNVs
8.7 years ago by alons ▴ 270
0
votes
1
reply
7.5k
views
Comment: C: Tools for SV & CNV detection
8.7 years ago by alons ▴ 270
0
votes
0
replies
7.5k
views
Comment: C: Tools for SV & CNV detection
8.8 years ago by alons ▴ 270
0
votes
1
reply
7.5k
views
Comment: C: Tools for SV & CNV detection
8.8 years ago by alons ▴ 270
10
votes
14
replies
7.5k
views
6 follow
Tools for SV & CNV detection
DNA ngs structural-variants cnv cancer
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 270
0
votes
1
reply
7.5k
views
Comment: C: Tools for SV & CNV detection
8.8 years ago by alons ▴ 270
0
votes
0
replies
7.5k
views
Comment: C: Tools for SV & CNV detection
8.8 years ago by alons ▴ 270
0
votes
0
replies
7.5k
views
Comment: C: Tools for SV & CNV detection
8.8 years ago by alons ▴ 270
1
vote
0
replies
6.1k
views
Comment: C: How can I add OMIM and HGMD data file on action right away to my VCF file?
8.9 years ago by alons ▴ 270
0
votes
1
reply
5.5k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
9.0 years ago by alons ▴ 270
1
vote
0
replies
4.6k
views
Comment: C: Lower GATK's HaplotypeCaller threshold for allele frequency as part of variant c
9.3 years ago by alons ▴ 270
0
votes
1
reply
4.6k
views
Comment: C: Lower GATK's HaplotypeCaller threshold for allele frequency as part of variant c
9.3 years ago by alons ▴ 270
3
votes
4
replies
4.6k
views
Lower GATK's HaplotypeCaller threshold for allele frequency as part of variant calling pipeline
gatk vcf freebayes variant-calling ngs
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 270
0
votes
1
reply
3.6k
views
Answer: Answer: bcf to vcf Problem
updated 24 months ago by 44k • written 9.4 years ago by ▴ 270
0
votes
0
replies
3.8k
views
Comment: Comment: GATK recalibration, duplicates & realignment
updated 23 months ago by 44k • written 9.4 years ago by ▴ 270
2
votes
2
replies
3.8k
views
GATK recalibration, duplicates & realignment
alignment gatk realignment bam ngs
updated 23 months ago by 44k • written 9.4 years ago by ▴ 270
50 results • Page 1 of 1
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