Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
708
views
GFF/GTF: how to translate CDS genomic coordinates to protein coordinates
GTF GFF3
updated 3.3 years ago by 8.9k • written 3.3 years ago by ★ 1.2k
0
votes
1
reply
4.0k
views
Comment: Comment: Optical duplicates?
3.5 years ago by abascalfederico ★ 1.2k
0
votes
1
reply
4.0k
views
Comment: Comment: Optical duplicates?
3.5 years ago by abascalfederico ★ 1.2k
7
votes
6
replies
4.0k
views
Optical duplicates?
duplicate optical
updated 2.7 years ago by ▴ 60 • written 3.5 years ago by ★ 1.2k
3
votes
3
replies
5.8k
views
Program to calculate and add the NM tag to a bam file
bam NM
updated 3.9 years ago by 20 • written 7.3 years ago by ★ 1.2k
0
votes
1
reply
2.0k
views
Answer: A: Extract samples with alternative genotype from a multi-sample VCF
4.0 years ago by abascalfederico ★ 1.2k
3
votes
0
replies
66k
views
Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by 44k • written 9.1 years ago by ★ 1.2k
0
votes
0
replies
1.7k
views
Answer: A: Apt way to perform multi pairwise alignments ?
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 1.2k
3
votes
0
replies
2.1k
views
Answer: A: 23andMe SNP data does not correlate with UCSC. What am I doing wrong?
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 1.2k
6
votes
0
replies
13k
views
Answer: A: samtools view - F 4 removes sam header and truncates file??
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 1.2k
1
vote
0
replies
5.6k
views
Comment: C: List of CNV (copy number variation) regions in the human genome
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 1.2k
2
votes
0
replies
4.5k
views
Answer: A: How to download intronic positions from Ensembl
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 1.2k
0
votes
0
replies
2.5k
views
Comment: C: Ancestral Allele for the Genus Gallus
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 1.2k
3
votes
1
reply
4.3k
views
Answer: A: Recode VCF file according to ancestral alleles (AA)
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 1.2k
0
votes
0
replies
2.5k
views
Answer: A: Repeat regions were contained in cds file (extracted from evm.out.gff3 by using
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 1.2k
0
votes
1
reply
12k
views
Comment: C: How to properly merge multiple runs into one bam file ?
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 1.2k
3
votes
1
reply
12k
views
Answer: A: How to properly merge multiple runs into one bam file ?
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 1.2k
0
votes
0
replies
3.4k
views
Answer: A: How to show my chosen SNPs on the UCSC genome browser?
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 1.2k
1
vote
0
replies
2.2k
views
Answer: A: Gene to coordinates
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 1.2k
0
votes
1
reply
5.7k
views
Answer: A: Bioedit: remove all gaps in selected region
updated 4.9 years ago by 44k • written 8.9 years ago by ★ 1.2k
2
votes
0
replies
10k
views
Answer: A: BWA alignment using paired end reads from different lanes
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.2k
0
votes
0
replies
2.3k
views
Comment: C: SNP data analysis - advices for statistics
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.2k
0
votes
0
replies
3.3k
views
Answer: A: finding reads from fastq files corresponds to particular transcript from fasta f
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.2k
1
vote
1
reply
11k
views
Answer: A: What are the terms for reference allele and alternate alleles in cancer?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.2k
0
votes
1
reply
2.0k
views
Answer: A: Gene names from NCBI is not able to use for overlapping in species comparison
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.2k
0
votes
0
replies
4.5k
views
Answer: A: How to find transposable element genes in ensembl annotation
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.2k
0
votes
1
reply
7.6k
views
Comment: C: How to interpret LRT < 0 in codeml branch-model based test?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.2k
0
votes
1
reply
7.6k
views
Comment: C: How to interpret LRT < 0 in codeml branch-model based test?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.2k
4
votes
1
reply
7.6k
views
Answer: A: How to interpret LRT < 0 in codeml branch-model based test?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.2k
1
vote
0
replies
1.6k
views
Answer: A: Retrieve taxon age from Ensembl
updated 5.0 years ago by 44k • written 9.3 years ago by ★ 1.2k
1
vote
2
replies
1.6k
views
Tool to segment genome according to SNP density?
hmm segmentation snp density
updated 5.0 years ago by 20 • written 7.1 years ago by ★ 1.2k
0
votes
0
replies
3.9k
views
Comment: C: Duplicated read names in Fastq file
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.2k
4
votes
1
reply
8.0k
views
Answer: A: distance between two genes
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.2k
2
votes
1
reply
2.1k
views
Answer: A: Phylogeny using UTR sequences: any insights?
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.2k
0
votes
0
replies
843
views
VCF human-chimp divergence?
vcf
5.2 years ago by abascalfederico ★ 1.2k
2
votes
4
replies
3.9k
views
Duplicated read names in Fastq file
next-gen-sequencing
updated 23 months ago by 44k • written 9.4 years ago by ★ 1.2k
0
votes
0
replies
5.1k
views
Comment: C: Blastn high mem usage, very low CPU usage
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 1.2k
0
votes
1
reply
1.8k
views
Comment: C: strand bias, gram negative bacteria
updated 6.2 years ago by 44k • written 8.7 years ago by ★ 1.2k
0
votes
0
replies
4.1k
views
Comment: C: How to get predicted protein sequence from a genome?
updated 6.2 years ago by 44k • written 8.7 years ago by ★ 1.2k
1
vote
1
reply
4.1k
views
Comment: C: How to get predicted protein sequence from a genome?
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 1.2k
1
vote
1
reply
4.8k
views
Comment: C: Better strategies for repeat masking?
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 1.2k
0
votes
1
reply
1.9k
views
Answer: A: Alignment & Conserved Element
updated 6.2 years ago by 44k • written 8.7 years ago by ★ 1.2k
1
vote
0
replies
3.1k
views
Answer: A: Convert ensembl gene ID
updated 6.2 years ago by 44k • written 8.7 years ago by ★ 1.2k
0
votes
0
replies
2.5k
views
Comment: C: How to get a list of reads supporting a variant in R?
6.8 years ago by abascalfederico ★ 1.2k
0
votes
1
reply
2.5k
views
Comment: C: How to get a list of reads supporting a variant in R?
6.8 years ago by abascalfederico ★ 1.2k
0
votes
1
reply
2.5k
views
Comment: C: How to get a list of reads supporting a variant in R?
6.8 years ago by abascalfederico ★ 1.2k
3
votes
7
replies
2.5k
views
How to get a list of reads supporting a variant in R?
R bam
updated 6.8 years ago by 104k • written 6.8 years ago by ★ 1.2k
0
votes
0
replies
5.8k
views
Comment: C: Program to calculate and add the NM tag to a bam file
7.3 years ago by abascalfederico ★ 1.2k
0
votes
0
replies
2.0k
views
Comment: C: Why ExAC used bwa aln instead of mem?
7.4 years ago by abascalfederico ★ 1.2k
4
votes
2
replies
2.0k
views
Why ExAC used bwa aln instead of mem?
exac bwa
7.4 years ago by abascalfederico ★ 1.2k
180 results • Page 1 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6