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0
votes
1
reply
2.3k
views
Answer:
A: Count right and left mate pairs from Sam files
8.0 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
2.2k
views
Comment:
C: Pair reads with BAM headers and number of mapped reads
8.0 years ago by
abascalfederico
★ 1.2k
2
votes
1
reply
2.2k
views
Answer:
A: Pair reads with BAM headers and number of mapped reads
8.0 years ago by
abascalfederico
★ 1.2k
1
vote
1
reply
2.7k
views
Comment:
C: Identification of haplotype blocks
8.1 years ago by
abascalfederico
★ 1.2k
1
vote
1
reply
2.7k
views
Answer:
A: Identification of haplotype blocks
8.1 years ago by
abascalfederico
★ 1.2k
2
votes
4
replies
2.7k
views
Identification of haplotype blocks
haplotype blocks
8.1 years ago by
abascalfederico
★ 1.2k
3
votes
0
replies
1.9k
views
Samtools' mpileup with pysam: enabling and disabling BAQ probabilistic realignment
samtools
pysam
mpileup
8.1 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
3.5k
views
Answer:
A: Getting p-values for whether the allele frequencies from two or more populations
8.2 years ago by
abascalfederico
★ 1.2k
0
votes
1
reply
2.5k
views
Comment:
C: Software to identify overrepresented k-mers in sequencing data
8.2 years ago by
abascalfederico
★ 1.2k
5
votes
5
replies
2.5k
views
Software to identify overrepresented k-mers in sequencing data
sequencing
k-mer
updated 8.2 years ago by
Pierre Lindenbaum
164k • written 8.2 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
1.9k
views
Comment:
A: best way to get chimp-human homologous sites
8.4 years ago by
abascalfederico
★ 1.2k
3
votes
3
replies
1.9k
views
best way to get chimp-human homologous sites
sequencing
variants
gvcf
8.4 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
9.9k
views
Comment:
C: strange issues with absent EOF markers in BAM files
8.5 years ago by
abascalfederico
★ 1.2k
1
vote
1
reply
9.9k
views
Comment:
C: strange issues with absent EOF markers in BAM files
8.5 years ago by
abascalfederico
★ 1.2k
7
votes
5
replies
9.9k
views
strange issues with absent EOF markers in BAM files
samtools
picard-tools
bam
eof
8.5 years ago by
abascalfederico
★ 1.2k
1
vote
0
replies
3.6k
views
Comment:
C: samtools merge respecting original read groups
8.5 years ago by
abascalfederico
★ 1.2k
2
votes
5
replies
3.6k
views
samtools merge respecting original read groups
samtools
read groups
8.5 years ago by
abascalfederico
★ 1.2k
1
vote
1
reply
3.6k
views
Answer:
A: samtools merge respecting original read groups
8.5 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
3.6k
views
Comment:
C: samtools merge respecting original read groups
8.5 years ago by
abascalfederico
★ 1.2k
2
votes
1
reply
2.3k
views
Uniquely mapped PAIRS of reads
bam
samtools
updated 20 months ago by
Ram
44k • written 8.5 years ago by
abascalfederico
★ 1.2k
6
votes
2
replies
4.3k
views
Illumina's HiSeq strange Phred quality score
phred
illumina
hiseq
updated 8.5 years ago by
DVA
▴ 630 • written 8.5 years ago by
abascalfederico
★ 1.2k
1
vote
0
replies
2.6k
views
Comment:
C: How to retrieve the paralogues for a limited taxonomic group
8.6 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
2.6k
views
Answer:
A: How to retrieve the paralogues for a limited taxonomic group
8.6 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
2.5k
views
Comment:
C: Blast or mapper ?
8.6 years ago by
abascalfederico
★ 1.2k
1
vote
0
replies
2.5k
views
Comment:
C: Blast or mapper ?
8.6 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
2.3k
views
Comment:
C: Working with SNPEFF for Annotating Variant Calling
8.6 years ago by
abascalfederico
★ 1.2k
0
votes
1
reply
2.1k
views
Answer:
A: Does any large resequencing project have a genuinely hg38 VCF?
8.6 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
1.7k
views
Answer:
A: Simple question: obtaining GO terminology utilizing NCBI GI's
8.6 years ago by
abascalfederico
★ 1.2k
3
votes
0
replies
1.8k
views
Comment:
C: Is it good practice to convert lowewst quality genotyes to missing?
8.6 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
2.6k
views
Comment:
C: How to avoid a phylogenetic bias testing a hypothesis on a big set of bacterial
8.7 years ago by
abascalfederico
★ 1.2k
0
votes
1
reply
2.6k
views
Answer:
A: How to avoid a phylogenetic bias testing a hypothesis on a big set of bacterial
8.7 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
4.5k
views
Comment:
C: remove scaffold and other unplaced sequence before mapping ?
8.7 years ago by
abascalfederico
★ 1.2k
1
vote
1
reply
4.5k
views
Answer:
A: remove scaffold and other unplaced sequence before mapping ?
8.7 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
1.9k
views
Answer:
A: Set gapopen and gapextend parameters for psiblast command line
8.7 years ago by
abascalfederico
★ 1.2k
2
votes
1
reply
2.4k
views
Answer:
A: BLAST: One read matches same region multiple times
8.7 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
3.5k
views
Comment:
C: picard: error reading BAM file
8.7 years ago by
abascalfederico
★ 1.2k
4
votes
9
replies
3.5k
views
picard: error reading BAM file
bam
htsjdk
picard
updated 8.7 years ago by
igor
13k • written 8.7 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
3.5k
views
Comment:
C: picard: error reading BAM file
8.7 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
3.5k
views
Comment:
C: picard: error reading BAM file
8.7 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
3.6k
views
Comment:
C: Creating custom ALT references for BWA
8.7 years ago by
abascalfederico
★ 1.2k
0
votes
1
reply
3.6k
views
Answer:
A: Creating custom ALT references for BWA
8.7 years ago by
abascalfederico
★ 1.2k
1
vote
0
replies
2.6k
views
Comment:
C: TERT isoform discrepancies UCSC vs Ensembl
8.7 years ago by
abascalfederico
★ 1.2k
1
vote
0
replies
3.3k
views
Comment:
C: percentage of amino acids, normalize by background amino acid probability
8.7 years ago by
abascalfederico
★ 1.2k
1
vote
2
replies
3.3k
views
Comment:
C: percentage of amino acids, normalize by background amino acid probability
8.7 years ago by
abascalfederico
★ 1.2k
1
vote
1
reply
3.3k
views
Comment:
C: percentage of amino acids, normalize by background amino acid probability
8.7 years ago by
abascalfederico
★ 1.2k
0
votes
0
replies
2.3k
views
Answer:
A: Problem while comparing three vcf files with vcf-compare
8.7 years ago by
abascalfederico
★ 1.2k
2
votes
1
reply
3.3k
views
Answer:
A: percentage of amino acids, normalize by background amino acid probability
8.7 years ago by
abascalfederico
★ 1.2k
1
vote
0
replies
6.5k
views
Comment:
C: Map gene gain and loss in phylogenetic tree
8.7 years ago by
abascalfederico
★ 1.2k
1
vote
1
reply
6.5k
views
Answer:
A: Map gene gain and loss in phylogenetic tree
8.7 years ago by
abascalfederico
★ 1.2k
3
votes
1
reply
4.1k
views
Answer:
A: Protein coding transcripts with vep
8.7 years ago by
abascalfederico
★ 1.2k
180 results • Page
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