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Comment: Comment: Detection of unknown sub cells in a population of cells using DEGs from scRNAseq
7 weeks ago by ashkan ▴ 160
0
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3
replies
394
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Detection of unknown sub cells in a population of cells using DEGs from scRNAseq data
scRNAseq
updated 7 weeks ago by 85k • written 7 weeks ago by ▴ 160
0
votes
1
reply
212
views
Sorting DEGs in the dotplot for every column
scRNAseq
updated 3 months ago by 5.9k • written 3 months ago by ▴ 160
0
votes
1
reply
257
views
No output when converting transcript IDs to gene symbols
RNA-seq
updated 6 months ago by 44k • written 6 months ago by ▴ 160
3
votes
2
replies
400
views
converting transcript IDs (Ensembl) to gene symbols in R
RNA-seq
updated 6 months ago by 147k • written 6 months ago by ▴ 160
0
votes
1
reply
738
views
How to load count matrix of scRNAseq data from cel-seq2 (96 well plates) protocol into a Seurat object
scRNAseq
updated 16 months ago by ★ 2.0k • written 16 months ago by ▴ 160
0
votes
1
reply
471
views
how to choose the best RNAseq protocol for patients sample
RNAseq
updated 23 months ago by 5.0k • written 23 months ago by ▴ 160
0
votes
0
replies
425
views
validation of pipeline for SV, SNV and repeat analysis
SV repeat SNV
2.3 years ago by ashkan ▴ 160
7
votes
6
replies
5.1k
views
6 follow
extracting 5'UTR of each gene
RNA-Seq
updated 4.2 years ago by 20 • written 8.0 years ago by ▴ 160
7
votes
7
replies
6.9k
views
Ribo-seq vs RNA-seq read count
RNA-Seq
updated 6.2 years ago by ▴ 20 • written 8.1 years ago by ▴ 160
3
votes
3
replies
5.6k
views
loading data file into GSEA
RNA-Seq
updated 6.6 years ago by • 0 • written 8.1 years ago by ▴ 160
0
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1
reply
2.3k
views
Comment: C: read count normalization for spike
7.7 years ago by ashkan ▴ 160
19
votes
11
replies
24k
views
9 follow
finding adapters from fastq file
RNA-Seq
updated 3.5 years ago by ▴ 10 • written 7.8 years ago by ▴ 160
2
votes
2
replies
1.2k
views
grouping the genes based on the length of coding sequence
sequencing
updated 7.8 years ago by 164k • written 7.8 years ago by ▴ 160
2
votes
2
replies
1.4k
views
optimum statistical test to get significance level
rna-seq
updated 7.9 years ago by 20 • written 8.0 years ago by ▴ 160
7
votes
4
replies
4.1k
views
how to score the values in a dictionary in python
sequence
updated 8.0 years ago by 11k • written 8.0 years ago by ▴ 160
1
vote
3
replies
2.3k
views
the most frequent isoform of each gene specific to the cell line
rna-seq
8.0 years ago by ashkan ▴ 160
0
votes
3
replies
1.9k
views
problem with filtering "Sequence unavailable"
sequence
updated 8.0 years ago by 44k • written 8.0 years ago by ▴ 160
0
votes
1
reply
3.4k
views
filtering some sequences from txt file in python
sequence
8.0 years ago by ashkan ▴ 160
0
votes
5
replies
1.6k
views
identifying mutation & copy numbers using sequencing data
SNP
updated 8.0 years ago by ★ 2.7k • written 8.0 years ago by ▴ 160
13
votes
17
replies
5.2k
views
7 follow
error in removing some lines in bam file
alignment
written 8.0 years ago by ▴ 160
0
votes
4
replies
5.2k
views
Comment: C: error in removing some lines in bam file
8.0 years ago by ashkan ▴ 160
1
vote
2
replies
1.9k
views
editting bam file in shell
alignment
8.0 years ago by ashkan ▴ 160
0
votes
1
reply
2.0k
views
the difference between human and mouse wiggle files for uploading on UCSC
RNA-Seq
8.1 years ago by ashkan ▴ 160
1
vote
4
replies
2.9k
views
CDS read counts per gene
RNA-Seq
updated 8.1 years ago by 20 • written 8.1 years ago by ▴ 160
0
votes
0
replies
2.1k
views
Comment: C: problem with uploading wiggle files to UCSC
8.1 years ago by ashkan ▴ 160
0
votes
2
replies
2.1k
views
problem with uploading wiggle files to UCSC
genome
8.1 years ago by ashkan ▴ 160
0
votes
1
reply
1.4k
views
running GSEA for EMT targets_SOLVED
RNA-Seq
8.1 years ago by ashkan ▴ 160
4
votes
4
replies
3.9k
views
differentially expression analysis using raw read counts
RNA-Seq
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by ▴ 160
8
votes
4
replies
4.1k
views
exporting the results of edgeR into a text file using R
rna-seq
updated 8.1 years ago by 8.3k • written 8.1 years ago by ▴ 160
0
votes
1
reply
4.1k
views
Comment: C: exporting the results of edgeR into a text file using R
8.1 years ago by ashkan ▴ 160
1
vote
4
replies
2.2k
views
problem with counting reads per gene using HTseq
RNA-Seq
8.1 years ago by ashkan ▴ 160
3
votes
11
replies
7.4k
views
how to modify one column in text file in python - solved
RNA-Seq
updated 8.1 years ago by 47k • written 8.1 years ago by ▴ 160
0
votes
2
replies
1.5k
views
coding sequnce read coun
RNA-Seq
updated 8.1 years ago by 47k • written 8.1 years ago by ▴ 160
1
vote
1
reply
4.6k
views
DNA to protein in python
next-gen
8.1 years ago by ashkan ▴ 160
0
votes
1
reply
6.9k
views
Comment: C: Ribo-seq vs RNA-seq read count
8.1 years ago by ashkan ▴ 160
0
votes
0
replies
6.9k
views
Comment: C: Ribo-seq vs RNA-seq read count
8.1 years ago by ashkan ▴ 160
2
votes
2
replies
1.3k
views
codon occurrence in the coding sequence in python
RNA-Seq
updated 8.1 years ago by 104k • written 8.1 years ago by ▴ 160
0
votes
0
replies
1.3k
views
Comment: C: upstream open reading frame gene filteration
8.2 years ago by ashkan ▴ 160
1
vote
3
replies
1.3k
views
upstream open reading frame gene filteration
RNA-Seq
8.2 years ago by ashkan ▴ 160
0
votes
1
reply
2.6k
views
Comment: C: correction for multiple testing
8.3 years ago by ashkan ▴ 160
3
votes
3
replies
2.6k
views
correction for multiple testing
RNA-Seq
updated 8.3 years ago by 6.6k • written 8.3 years ago by ▴ 160
0
votes
1
reply
2.0k
views
Comment: C: statistical analysis of RNA-seq data
8.3 years ago by ashkan ▴ 160
4
votes
6
replies
2.0k
views
statistical analysis of RNA-seq data
RNA-Seq
updated 8.3 years ago by ▴ 310 • written 8.3 years ago by ▴ 160
1
vote
1
reply
1.4k
views
how to make permanent links on the UCSC
RNA-Seq next-gen
updated 8.3 years ago by 164k • written 8.3 years ago by ▴ 160
0
votes
1
reply
1.2k
views
projecting short reads on the transcript
sequencing alignment
8.4 years ago by ashkan ▴ 160
1
vote
1
reply
1.3k
views
Comment: C: problem in getting all chromosomes from UCSC when uploading alignment results
8.4 years ago by ashkan ▴ 160
7
votes
5
replies
1.3k
views
problem in results
RNA-Seq genome next-gen
8.4 years ago by ashkan ▴ 160
1
vote
1
reply
1.3k
views
Comment: C: problem in getting all chromosomes from UCSC when uploading alignment results
updated 8.5 years ago by 104k • written 8.5 years ago by ▴ 160
1
vote
6
replies
2.8k
views
error in uploading bigbed file on UCSC
RNA-Seq sequencing ucsc
updated 8.5 years ago by 24k • written 8.5 years ago by ▴ 160
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