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2
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3.7k
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Comment: Comment: Are there mm39/GRCm39 blacklist regions?
15 months ago by igor 13k
40
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35
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14k
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10 follow
find positions of a short sequence in a genome
sequence search
updated 15 months ago by ★ 1.6k • written 8.2 years ago by 13k
0
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0
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1.6k
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Comment: Comment: msigdbr returns the same genesets for mouse as in for human,
20 months ago by igor 13k
0
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1
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1.6k
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Comment: Comment: msigdbr returns the same genesets for mouse as in for human,
20 months ago by igor 13k
0
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1
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1.3k
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Comment: Comment: Single cell cluster evaluation does not output reasonable number of stable clust
21 months ago by igor 13k
0
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0
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1.8k
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Comment: Comment: How does FASTQC work?
2.1 years ago by igor 13k
1
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1
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1.3k
views
Comment: Comment: Single cell cluster evaluation does not output reasonable number of stable clust
2.1 years ago by igor 13k
0
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0
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1.9k
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Comment: Comment: hg38 low-quality site BED file
2.1 years ago by igor 13k
0
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0
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1.3k
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Comment: Comment: Enrichr gene set libraries info
2.1 years ago by igor 13k
0
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0
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653
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Answer: Answer: scRNA cluster mapping comparision derived from two different analysis
2.1 years ago by igor 13k
0
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1
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1.3k
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Comment: Comment: Enrichr gene set libraries info
2.1 years ago by igor 13k
1
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0
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2.5k
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Comment: Comment: Can we use UMAP clustering on bulk data?
2.1 years ago by igor 13k
1
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0
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1.8k
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Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
2.1 years ago by igor 13k
3
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5
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1.3k
views
Enrichr gene set libraries info
enrichr
2.1 years ago by igor 13k
0
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0
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11k
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Comment: Comment: Detecting copy number alterations based on RNA-seq data
2.3 years ago by igor 13k
12
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11
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11k
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Detecting copy number alterations based on RNA-seq data
RNA-Seq CNV copy number
2.3 years ago by igor 13k
0
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0
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1.2k
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Comment: Comment: single-cell consensus clustering
2.4 years ago by igor 13k
2
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3
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1.2k
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single-cell consensus clustering
scrna-seq FlowSOM ConsensusClusterPlus single-cell
2.4 years ago by igor 13k
0
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1
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4.6k
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Comment: Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
2.4 years ago by igor 13k
2
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0
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838
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Answer: Answer: Msigdb GO:BP
2.5 years ago by igor 13k
1
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1
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3.7k
views
Comment: Comment: Are there mm39/GRCm39 blacklist regions?
2.5 years ago by igor 13k
3
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2
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10k
views
survival analysis with a continuos variable
survival R
updated 2.7 years ago by • 0 • written 7.8 years ago by 13k
1
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1
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4.3k
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Comment: Comment: Install required dependencies for GATK4 on remote server without root privilege
2.7 years ago by igor 13k
0
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0
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1.7k
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Comment: Comment: GSVA from DESeq2
2.7 years ago by igor 13k
0
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0
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1.5k
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Comment: Comment: diagnosing contamination in RNA-seq data
2.8 years ago by igor 13k
0
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1
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1.5k
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Comment: Comment: diagnosing contamination in RNA-seq data
2.8 years ago by igor 13k
1
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1
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15k
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Comment: Comment: Combining GSEA (Gene Set Enrichment analysis) and DEG (Differentially Expressed
2.8 years ago by igor 13k
5
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4
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7.7k
views
Calculate distances between items in different GRanges
R bioconductor granges
updated 2.9 years ago by ▴ 10 • written 7.8 years ago by 13k
0
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0
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2.0k
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Answer: Answer: scRNA-seq doublets with less features and UMIs than singlets? How?
2.9 years ago by igor 13k
0
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1
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4.7k
views
Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
2.9 years ago by igor 13k
0
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1
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4.7k
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Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
2.9 years ago by igor 13k
1
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0
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4.7k
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Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
2.9 years ago by igor 13k
0
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0
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997
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Comment: Comment: Kinship estimation of humans via WES
3.0 years ago by igor 13k
1
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0
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679
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Answer: Answer: Does Haplotypecaller of GATK find all the mutations?
3.1 years ago by igor 13k
0
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0
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3.2k
views
Answer: Answer: Calculation of gene coverage from BAM file
3.1 years ago by igor 13k
0
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1
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4.1k
views
Comment: Comment: STAR alignment speed?
3.1 years ago by igor 13k
1
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1
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4.1k
views
Comment: Comment: STAR alignment speed?
3.1 years ago by igor 13k
0
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0
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20k
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Answer: Answer: Cell Type Marker Databases?
3.1 years ago by igor 13k
1
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0
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3.2k
views
Comment: Comment: why starsolo estimated cell number very different from cellranger.v5
3.1 years ago by igor 13k
0
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1
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3.2k
views
Comment: Comment: why starsolo estimated cell number very different from cellranger.v5
3.1 years ago by igor 13k
0
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0
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2.1k
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Comment: Comment: ssGSEA scores correlate with the number of gene counts, should I be worried?
3.1 years ago by igor 13k
0
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1
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2.1k
views
Comment: Comment: ssGSEA scores correlate with the number of gene counts, should I be worried?
3.1 years ago by igor 13k
0
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1
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2.1k
views
Comment: Comment: ssGSEA scores correlate with the number of gene counts, should I be worried?
3.1 years ago by igor 13k
0
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1
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2.1k
views
Comment: Comment: ssGSEA scores correlate with the number of gene counts, should I be worried?
3.1 years ago by igor 13k
0
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0
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2.5k
views
Comment: Comment: ScarHRD
3.1 years ago by igor 13k
1
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0
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991
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Comment: Comment: sc-RNA matrix appears to be empty
3.1 years ago by igor 13k
0
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1
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2.5k
views
Answer: Answer: ScarHRD
3.1 years ago by igor 13k
0
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0
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2.6k
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Comment: Comment: TCGA Isoform Expression Data
3.1 years ago by igor 13k
1
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0
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3.2k
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Comment: Comment: Bowtie2 hg19 reference for gatk MuTect
3.2 years ago by igor 13k
0
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1
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1.9k
views
Comment: Comment: Can RNA-Seq be used for TMB calculation?
3.3 years ago by igor 13k
1,531 results • Page 1 of 31
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