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Comment: Comment: Normalization on top of TMM scaled data
18 months ago by weixiaokuan ▴ 140
1
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2
replies
789
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Normalization on top of TMM scaled data
RNA-Seq edgeR Normalization
18 months ago by weixiaokuan ▴ 140
9
votes
7
replies
2.7k
views
6 follow
Can BWA (mem) detect longer deletions?
alignment bwa
updated 18 months ago by 20k • written 20 months ago by ▴ 140
1
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0
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2.7k
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Comment: Comment: Can BWA (mem) detect longer deletions?
19 months ago by weixiaokuan ▴ 140
0
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2
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2.7k
views
Comment: Comment: Can BWA (mem) detect longer deletions?
20 months ago by weixiaokuan ▴ 140
0
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1
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1.0k
views
Comment: Comment: How to read Varscan VCF output in column "Cons"?
21 months ago by weixiaokuan ▴ 140
0
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3
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1.0k
views
How to read Varscan VCF output in column "Cons"?
VCF Varscan
updated 21 months ago by ★ 2.4k • written 21 months ago by ▴ 140
0
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2
replies
981
views
How to map genomic sequence to protein functions or domains?
GRange Genome Ensembldb annotation
updated 2.0 years ago by 7.4k • written 2.0 years ago by ▴ 140
0
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1
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1.6k
views
Comment: Comment: How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
2.2 years ago by weixiaokuan ▴ 140
3
votes
3
replies
1.6k
views
How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
mac bowtie2 bwa m2
updated 2.2 years ago by 151k • written 2.2 years ago by ▴ 140
0
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0
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1.2k
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Comment: Comment: Any R package for pathway upstream regulator analysis?
2.4 years ago by weixiaokuan ▴ 140
0
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2
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1.2k
views
Any R package for pathway upstream regulator analysis?
network-analysis Pathway-Analysis IPA
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 140
1
vote
1
reply
1.3k
views
Sleuth analysis with only using Kallisto abundance.tsv files no HDF5 files
sleuth kallisto
updated 2.4 years ago by ★ 7.4k • written 2.4 years ago by ▴ 140
0
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1
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1.1k
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Comment: Comment: How to use Sleuth for Kallisto results in one directory?
2.4 years ago by weixiaokuan ▴ 140
2
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2
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1.1k
views
How to use Sleuth for Kallisto results in one directory?
sleuth kallisto
updated 2.4 years ago by ★ 7.4k • written 2.4 years ago by ▴ 140
12
votes
28
replies
11k
views
illumina EPIC array support by R packages?
methylation minfi champ rnbeads
updated 5.8 years ago by 8.3k • written 8.9 years ago by ▴ 140
0
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0
replies
861
views
significance evaluation of Motif identified by SeqLogo
alignment sequence motif
6.4 years ago by weixiaokuan ▴ 140
0
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3
replies
3.0k
views
bioawk output in original fastq format
bioawk fastq
updated 6.5 years ago by ▴ 460 • written 7.7 years ago by ▴ 140
0
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1
reply
4.0k
views
Comment: C: RNA-Seq without replicate using Kallisto
8.6 years ago by weixiaokuan ▴ 140
0
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1
reply
4.0k
views
Comment: C: RNA-Seq without replicate using Kallisto
8.6 years ago by weixiaokuan ▴ 140
0
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2
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4.0k
views
Comment: C: RNA-Seq without replicate using Kallisto
8.6 years ago by weixiaokuan ▴ 140
0
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1
reply
4.0k
views
Comment: C: RNA-Seq without replicate using Kallisto
8.6 years ago by weixiaokuan ▴ 140
0
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0
replies
4.0k
views
Comment: C: RNA-Seq without replicate using Kallisto
8.6 years ago by weixiaokuan ▴ 140
1
vote
11
replies
4.0k
views
RNA-Seq without replicate using Kallisto
RNA-Seq Kallisto
8.6 years ago by weixiaokuan ▴ 140
1
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0
replies
6.3k
views
Comment: C: WGCNA maxBlockSize limit
8.8 years ago by weixiaokuan ▴ 140
0
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0
replies
6.3k
views
Comment: C: WGCNA maxBlockSize limit
8.8 years ago by weixiaokuan ▴ 140
0
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0
replies
6.3k
views
Comment: C: WGCNA maxBlockSize limit
8.8 years ago by weixiaokuan ▴ 140
0
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1
reply
6.3k
views
Comment: C: WGCNA maxBlockSize limit
8.8 years ago by weixiaokuan ▴ 140
0
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1
reply
6.3k
views
Comment: C: WGCNA maxBlockSize limit
8.8 years ago by weixiaokuan ▴ 140
1
vote
10
replies
6.3k
views
WGCNA maxBlockSize limit
WGCNA
8.8 years ago by weixiaokuan ▴ 140
1
vote
1
reply
11k
views
Comment: C: illumina EPIC array support by R packages?
8.8 years ago by weixiaokuan ▴ 140
1
vote
1
reply
11k
views
Comment: C: illumina EPIC array support by R packages?
8.8 years ago by weixiaokuan ▴ 140
1
vote
1
reply
11k
views
Comment: C: illumina EPIC array support by R packages?
8.8 years ago by weixiaokuan ▴ 140
0
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2
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11k
views
Comment: C: illumina EPIC array support by R packages?
8.8 years ago by weixiaokuan ▴ 140
0
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0
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2.3k
views
Comment: C: identify associated genes with methylation bumps
8.8 years ago by weixiaokuan ▴ 140
2
votes
2
replies
2.3k
views
identify associated genes with methylation bumps
methylation illumina epic minfi ChAMP RnBeads
updated 8.8 years ago by 13k • written 8.8 years ago by ▴ 140
0
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1
reply
11k
views
Comment: C: illumina EPIC array support by R packages?
8.9 years ago by weixiaokuan ▴ 140
0
votes
1
reply
11k
views
Comment: C: illumina EPIC array support by R packages?
8.9 years ago by weixiaokuan ▴ 140
0
votes
2
replies
11k
views
Comment: C: illumina EPIC array support by R packages?
8.9 years ago by weixiaokuan ▴ 140
0
votes
1
reply
3.4k
views
Comment: Comment: Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
updated 2.4 years ago by 45k • written 9.8 years ago by ▴ 140
2
votes
4
replies
3.4k
views
Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
RNA-Seq DESeq2
updated 2.4 years ago by 45k • written 9.8 years ago by ▴ 140
0
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0
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5.5k
views
Comment: Comment: DESeq2: different log2FC results when using subset of data
updated 2.4 years ago by 45k • written 9.8 years ago by ▴ 140
9
votes
5
replies
5.5k
views
DESeq2: different log2FC results when using subset of data
RNA-Seq DESeq2
updated 2.4 years ago by 45k • written 9.8 years ago by ▴ 140
0
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1
reply
16k
views
Comment: Comment: which normalized counts is better from DESeq2
updated 2.4 years ago by 45k • written 9.8 years ago by ▴ 140
21
votes
6
replies
16k
views
which normalized counts is better from DESeq2
RNA-Seq DESeq2
updated 2.4 years ago by 45k • written 9.8 years ago by ▴ 140
0
votes
0
replies
16k
views
Comment: C: which normalized counts is better from DESeq2
9.8 years ago by weixiaokuan ▴ 140
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