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0
votes
0
replies
350
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Comment: Comment: tools to increase hi-c resolution
14 days ago by J.F.Jiang ▴ 930
0
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2
replies
350
views
tools to increase hi-c resolution
resolution hi-c
14 days ago by J.F.Jiang ▴ 930
0
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0
replies
593
views
Comment: Comment: chromatin loop annotation for hic
4 months ago by J.F.Jiang ▴ 930
0
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2
replies
593
views
chromatin loop annotation for hic
enhancer chromatin HI-C promoter
4 months ago by J.F.Jiang ▴ 930
0
votes
0
replies
782
views
Comment: Comment: cancer type prediction based on RNASeq gene expression data?
12 months ago by J.F.Jiang ▴ 930
1
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2
replies
782
views
cancer type prediction based on RNASeq gene expression data?
cancer RNA-seq
updated 12 months ago by 45k • written 12 months ago by ▴ 930
20
votes
11
replies
16k
views
10 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 13 months ago by ★ 4.2k • written 11.9 years ago by ▴ 930
0
votes
0
replies
655
views
Any tool that can give me a list of DNA/RNA aptamers against specific protein as the in vitro SELEX library to screen the sequences?
aptamer protein SELEX
15 months ago by J.F.Jiang ▴ 930
0
votes
1
reply
846
views
tumor fraction estimation and fragment size plot using sWGS data
ctDNA NGS WGS
updated 19 months ago by 45k • written 2.6 years ago by ▴ 930
0
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0
replies
1.1k
views
Comment: Comment: BCR/TCR analysis using target capture sequencing data
2.1 years ago by J.F.Jiang ▴ 930
0
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2
replies
1.1k
views
BCR/TCR analysis using target capture sequencing data
capture ngs TCR BCR
2.1 years ago by J.F.Jiang ▴ 930
0
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1
reply
1.8k
views
Comment: Comment: combine/merge closet variants into one from mutect2
2.1 years ago by J.F.Jiang ▴ 930
0
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1
reply
1.8k
views
Comment: Comment: combine/merge closet variants into one from mutect2
2.1 years ago by J.F.Jiang ▴ 930
0
votes
5
replies
1.8k
views
combine/merge closet variants into one from mutect2
variants mutect2 merge gatk
updated 2.1 years ago by 102k • written 2.1 years ago by ▴ 930
0
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1
reply
1.2k
views
Comment: Comment: BCL2 fusions not detected in RNA level
2.1 years ago by J.F.Jiang ▴ 930
0
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4
replies
1.2k
views
BCL2 fusions not detected in RNA level
fusion RNA BCL2
updated 2.1 years ago by 88k • written 2.1 years ago by ▴ 930
0
votes
0
replies
654
views
multiplex pcr PRIMER
sequence primer multiplex pcr
2.3 years ago by J.F.Jiang ▴ 930
0
votes
0
replies
574
views
heterozygosity control from NGS data
heterozygosity NGS SNP
2.8 years ago by J.F.Jiang ▴ 930
0
votes
1
reply
1.4k
views
Comment: Comment: tumor fraction estimation for ctDNA panel sequecing data
3.3 years ago by J.F.Jiang ▴ 930
1
vote
3
replies
1.4k
views
tumor fraction estimation for ctDNA panel sequecing data
fraction NGS panel tumor ctDNA
updated 3.3 years ago by ▴ 550 • written 3.3 years ago by ▴ 930
0
votes
1
reply
1.1k
views
hgvs annotation from VCF
VCF HGVS annotation
updated 3.3 years ago by 21k • written 3.3 years ago by ▴ 930
0
votes
0
replies
599
views
any tool to plot the fragment profile for ctDNA samples?
fragment ctDNA
3.3 years ago by J.F.Jiang ▴ 930
4
votes
10
replies
10k
views
6 follow
GATK HaolotypeCaller takes too much time for variant calling
HaplotypeCaller GATK
updated 14 months ago by 45k • written 7.6 years ago by ▴ 930
0
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0
replies
1.0k
views
genomewide CNV analysis and plot from low pass WGS data
CNV CNVSEQ WGS
4.4 years ago by J.F.Jiang ▴ 930
0
votes
4
replies
1.4k
views
public tools to distinguish germline variants from somatic ones in NGS data without matched normal
germline somatic NGS tumor
updated 4.5 years ago by 20 • written 4.6 years ago by ▴ 930
0
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0
replies
1.4k
views
Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
4.6 years ago by J.F.Jiang ▴ 930
0
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1
reply
1.4k
views
Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
4.6 years ago by J.F.Jiang ▴ 930
0
votes
0
replies
991
views
best tool to evaluate the CNV status of germline samples using 1x WGS
CNV WGS
4.6 years ago by J.F.Jiang ▴ 930
0
votes
0
replies
934
views
Max mutation allele frequency against tumor purity
tumor AF PURITY
4.8 years ago by J.F.Jiang ▴ 930
0
votes
1
reply
1.4k
views
Comment: C: HPV EBV typing from cancer genome data
4.9 years ago by J.F.Jiang ▴ 930
2
votes
4
replies
1.4k
views
HPV EBV typing from cancer genome data
HPV EBV NGS
updated 4.9 years ago by ★ 2.9k • written 4.9 years ago by ▴ 930
32
votes
12
replies
25k
views
9 follow
Bwa Mem Method For Mapping, With Or Without Trimming Reads?
bwa
updated 4.9 years ago by 20 • written 11.4 years ago by ▴ 930
0
votes
1
reply
1.3k
views
LOH segment inferring from WES data for germline sample
LOH WES
5.1 years ago by J.F.Jiang ▴ 930
1
vote
6
replies
2.9k
views
fusion detection for DNA Sequencing data
fusion NGS DNA
updated 9 months ago by ▴ 270 • written 5.2 years ago by ▴ 930
0
votes
1
reply
2.9k
views
Comment: C: fusion detection for DNA Sequencing data
5.2 years ago by J.F.Jiang ▴ 930
1
vote
0
replies
2.9k
views
Comment: C: fusion detection for DNA Sequencing data
5.2 years ago by J.F.Jiang ▴ 930
1
vote
0
replies
2.1k
views
Comment: C: CNV analysis for tumor panel
5.2 years ago by J.F.Jiang ▴ 930
1
vote
1
reply
935
views
looking somatic variants interpreter, AS CKB database
ckb somatic interpreter
updated 5.3 years ago by 89k • written 5.4 years ago by ▴ 930
2
votes
5
replies
3.2k
views
remove primer sequences from BAM file
bam primer
updated 5.4 years ago by • 0 • written 6.8 years ago by ▴ 930
0
votes
2
replies
1.4k
views
convenient tools to collect target mapping metrics
target mapping
updated 5.5 years ago by 20 • written 5.5 years ago by ▴ 930
0
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0
replies
1.4k
views
Comment: C: convenient tools to collect target mapping metrics
5.5 years ago by J.F.Jiang ▴ 930
0
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0
replies
1.3k
views
calculate MSI STATUS using predefined MSI loci
MSI msisensor
5.6 years ago by J.F.Jiang ▴ 930
0
votes
1
reply
25k
views
Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
updated 5.7 years ago by 45k • written 11.4 years ago by ▴ 930
2
votes
5
replies
2.1k
views
CNV analysis for tumor panel
CNV
updated 5.9 years ago by ★ 2.8k • written 5.9 years ago by ▴ 930
1
vote
5
replies
3.4k
views
amplicon based germline CNV caller
amplicon germline CNV
updated 5.9 years ago by ▴ 90 • written 7.8 years ago by ▴ 930
0
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1
reply
2.1k
views
Comment: A: CNV analysis for tumor panel
5.9 years ago by J.F.Jiang ▴ 930
0
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2
replies
1.7k
views
pairwise calculation of relationship based on selected SNPs with MAF>0.3
relationship SNP
updated 6.5 years ago by 20 • written 7.6 years ago by ▴ 930
3
votes
3
replies
2.6k
views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype simulation SNP MAF LD
updated 6.6 years ago by 12k • written 7.5 years ago by ▴ 930
0
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0
replies
3.0k
views
Comment: C: Free Genetic Genealogy Software
6.8 years ago by J.F.Jiang ▴ 930
0
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0
replies
3.2k
views
Comment: C: remove primer sequences from BAM file
6.8 years ago by J.F.Jiang ▴ 930
279 results • Page 1 of 6
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