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0
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0
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441
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Comment: Comment: cancer type prediction based on RNASeq gene expression data?
5 months ago by J.F.Jiang ▴ 930
1
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2
replies
441
views
cancer type prediction based on RNASeq gene expression data?
cancer RNA-seq
updated 5 months ago by 44k • written 5 months ago by ▴ 930
20
votes
11
replies
15k
views
10 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 6 months ago by ★ 4.0k • written 11.3 years ago by ▴ 930
0
votes
0
replies
484
views
Any tool that can give me a list of DNA/RNA aptamers against specific protein as the in vitro SELEX library to screen the sequences?
aptamer protein SELEX
8 months ago by J.F.Jiang ▴ 930
0
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1
reply
611
views
tumor fraction estimation and fragment size plot using sWGS data
ctDNA NGS WGS
updated 12 months ago by 44k • written 2.0 years ago by ▴ 930
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0
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793
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Comment: Comment: BCR/TCR analysis using target capture sequencing data
18 months ago by J.F.Jiang ▴ 930
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2
replies
793
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BCR/TCR analysis using target capture sequencing data
capture ngs TCR BCR
18 months ago by J.F.Jiang ▴ 930
0
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1
reply
1.3k
views
Comment: Comment: combine/merge closet variants into one from mutect2
18 months ago by J.F.Jiang ▴ 930
0
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1
reply
1.3k
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Comment: Comment: combine/merge closet variants into one from mutect2
18 months ago by J.F.Jiang ▴ 930
0
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5
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1.3k
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combine/merge closet variants into one from mutect2
variants mutect2 merge gatk
updated 18 months ago by 101k • written 18 months ago by ▴ 930
0
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1
reply
865
views
Comment: Comment: BCL2 fusions not detected in RNA level
18 months ago by J.F.Jiang ▴ 930
0
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4
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865
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BCL2 fusions not detected in RNA level
fusion RNA BCL2
updated 18 months ago by 85k • written 18 months ago by ▴ 930
0
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0
replies
487
views
multiplex pcr PRIMER
sequence primer multiplex pcr
20 months ago by J.F.Jiang ▴ 930
0
votes
0
replies
408
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heterozygosity control from NGS data
heterozygosity NGS SNP
2.2 years ago by J.F.Jiang ▴ 930
0
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1
reply
1.1k
views
Comment: Comment: tumor fraction estimation for ctDNA panel sequecing data
2.7 years ago by J.F.Jiang ▴ 930
1
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3
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1.1k
views
tumor fraction estimation for ctDNA panel sequecing data
fraction NGS panel tumor ctDNA
updated 2.7 years ago by ▴ 550 • written 2.7 years ago by ▴ 930
0
votes
1
reply
807
views
hgvs annotation from VCF
VCF HGVS annotation
updated 2.7 years ago by 21k • written 2.7 years ago by ▴ 930
0
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0
replies
447
views
any tool to plot the fragment profile for ctDNA samples?
fragment ctDNA
2.8 years ago by J.F.Jiang ▴ 930
4
votes
10
replies
9.3k
views
6 follow
GATK HaolotypeCaller takes too much time for variant calling
HaplotypeCaller GATK
updated 7 months ago by 44k • written 7.0 years ago by ▴ 930
0
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0
replies
883
views
genomewide CNV analysis and plot from low pass WGS data
CNV CNVSEQ WGS
3.8 years ago by J.F.Jiang ▴ 930
0
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4
replies
1.1k
views
public tools to distinguish germline variants from somatic ones in NGS data without matched normal
germline somatic NGS tumor
updated 3.9 years ago by 20 • written 4.0 years ago by ▴ 930
0
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0
replies
1.1k
views
Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
4.0 years ago by J.F.Jiang ▴ 930
0
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1
reply
1.1k
views
Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
4.0 years ago by J.F.Jiang ▴ 930
0
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0
replies
831
views
best tool to evaluate the CNV status of germline samples using 1x WGS
CNV WGS
4.1 years ago by J.F.Jiang ▴ 930
0
votes
0
replies
733
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Max mutation allele frequency against tumor purity
tumor AF PURITY
4.2 years ago by J.F.Jiang ▴ 930
0
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1
reply
1.1k
views
Comment: C: HPV EBV typing from cancer genome data
4.3 years ago by J.F.Jiang ▴ 930
2
votes
4
replies
1.1k
views
HPV EBV typing from cancer genome data
HPV EBV NGS
updated 4.3 years ago by ★ 2.9k • written 4.3 years ago by ▴ 930
32
votes
12
replies
24k
views
9 follow
Bwa Mem Method For Mapping, With Or Without Trimming Reads?
bwa
updated 4.3 years ago by 20 • written 10.9 years ago by ▴ 930
0
votes
1
reply
1.1k
views
LOH segment inferring from WES data for germline sample
LOH WES
4.5 years ago by J.F.Jiang ▴ 930
1
vote
6
replies
2.4k
views
fusion detection for DNA Sequencing data
fusion NGS DNA
updated 10 weeks ago by ▴ 260 • written 4.6 years ago by ▴ 930
0
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1
reply
2.4k
views
Comment: C: fusion detection for DNA Sequencing data
4.6 years ago by J.F.Jiang ▴ 930
1
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0
replies
2.4k
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Comment: C: fusion detection for DNA Sequencing data
4.6 years ago by J.F.Jiang ▴ 930
1
vote
0
replies
1.7k
views
Comment: C: CNV analysis for tumor panel
4.6 years ago by J.F.Jiang ▴ 930
1
vote
1
reply
751
views
looking somatic variants interpreter, AS CKB database
ckb somatic interpreter
updated 4.7 years ago by 88k • written 4.8 years ago by ▴ 930
2
votes
5
replies
2.9k
views
remove primer sequences from BAM file
bam primer
updated 4.9 years ago by • 0 • written 6.3 years ago by ▴ 930
0
votes
2
replies
1.1k
views
convenient tools to collect target mapping metrics
target mapping
updated 4.9 years ago by 20 • written 5.0 years ago by ▴ 930
0
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0
replies
1.1k
views
Comment: C: convenient tools to collect target mapping metrics
5.0 years ago by J.F.Jiang ▴ 930
0
votes
0
replies
1.1k
views
calculate MSI STATUS using predefined MSI loci
MSI msisensor
5.1 years ago by J.F.Jiang ▴ 930
0
votes
1
reply
24k
views
Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
updated 5.1 years ago by 44k • written 10.9 years ago by ▴ 930
2
votes
5
replies
1.7k
views
CNV analysis for tumor panel
CNV
updated 5.3 years ago by ★ 2.8k • written 5.3 years ago by ▴ 930
1
vote
5
replies
3.1k
views
amplicon based germline CNV caller
amplicon germline CNV
updated 5.3 years ago by ▴ 90 • written 7.3 years ago by ▴ 930
0
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1
reply
1.7k
views
Comment: A: CNV analysis for tumor panel
5.3 years ago by J.F.Jiang ▴ 930
0
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2
replies
1.5k
views
pairwise calculation of relationship based on selected SNPs with MAF>0.3
relationship SNP
updated 5.9 years ago by 20 • written 7.0 years ago by ▴ 930
3
votes
3
replies
2.3k
views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype simulation SNP MAF LD
updated 6.0 years ago by 12k • written 6.9 years ago by ▴ 930
0
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0
replies
2.7k
views
Comment: C: Free Genetic Genealogy Software
6.3 years ago by J.F.Jiang ▴ 930
0
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0
replies
2.9k
views
Comment: C: remove primer sequences from BAM file
6.3 years ago by J.F.Jiang ▴ 930
0
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1
reply
2.9k
views
Comment: C: remove primer sequences from BAM file
updated 6.3 years ago by 47k • written 6.3 years ago by ▴ 930
0
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2
replies
1.9k
views
autosomal ancestry inference
GWAS ancestry
updated 6.3 years ago by 88k • written 6.3 years ago by ▴ 930
0
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1
reply
1.8k
views
how to genotype given SNP alleles from NGS data using freebayes
genotype NGS freebayes
updated 6.9 years ago by • 0 • written 7.2 years ago by ▴ 930
0
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0
replies
1.8k
views
Comment: C: extract region bam
7.0 years ago by J.F.Jiang ▴ 930
275 results • Page 1 of 6
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