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0
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0
replies
5.9k
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Comment: Comment: flagstats results show 0.0 % properly paired reads
updated 24 months ago by 44k • written 9.4 years ago by ▴ 410
0
votes
3
replies
7.4k
views
Plotting Venn diagram for multiple BED files
ngs Venn diagram
updated 5.2 years ago by 20 • written 7.8 years ago by ▴ 410
7
votes
16
replies
6.3k
views
Switch the position of REF/ALT alleles based on AA (ancestral allele) annotations in VCF
vcf ngs
updated 5.3 years ago by ▴ 30 • written 7.3 years ago by ▴ 410
0
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1
reply
2.3k
views
Comment: C: Plotting F3 statistics values on world map
5.9 years ago by SOHAIL ▴ 410
0
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6
replies
2.3k
views
Plotting F3 statistics values on world map
R ngs
5.9 years ago by SOHAIL ▴ 410
0
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1
reply
2.3k
views
Comment: C: Plotting F3 statistics values on world map
5.9 years ago by SOHAIL ▴ 410
0
votes
1
reply
4.8k
views
Comment: C: reference genome hs37d5 with PhiX
6.0 years ago by SOHAIL ▴ 410
8
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11
replies
4.8k
views
reference genome hs37d5 with PhiX
reference genome ngs
updated 2.4 years ago by 147k • written 6.2 years ago by ▴ 410
0
votes
1
reply
1.5k
views
Select the transversions only from SNP data set
ngs plink
6.0 years ago by SOHAIL ▴ 410
0
votes
1
reply
4.8k
views
Comment: C: reference genome hs37d5 with PhiX
6.2 years ago by SOHAIL ▴ 410
0
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1
reply
4.8k
views
Comment: C: reference genome hs37d5 with PhiX
6.2 years ago by SOHAIL ▴ 410
1
vote
1
reply
4.8k
views
Comment: C: reference genome hs37d5 with PhiX
6.2 years ago by SOHAIL ▴ 410
0
votes
0
replies
3.3k
views
Comment: C: Remove ambiguous calls in the VCF file
6.2 years ago by SOHAIL ▴ 410
0
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1
reply
3.3k
views
Comment: C: Remove ambiguous calls in the VCF file
updated 6.2 years ago by 16k • written 6.2 years ago by ▴ 410
0
votes
4
replies
3.3k
views
Remove ambiguous calls in the VCF file
VCF
updated 6.2 years ago by 85k • written 6.2 years ago by ▴ 410
0
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1
reply
5.0k
views
Comment: C: Genotyping with samtools/bcftools
6.4 years ago by SOHAIL ▴ 410
2
votes
3
replies
5.0k
views
Genotyping with samtools/bcftools
samtools bcftools ngs
updated 6.4 years ago by 88k • written 6.4 years ago by ▴ 410
9
votes
3
replies
3.4k
views
Optimizing Java Jar's parameters while processing large high throughput sequencing data
ngs java
updated 6.4 years ago by 20 • written 8.3 years ago by ▴ 410
0
votes
1
reply
3.4k
views
Calculate the genotype frequency
ngs vcf
updated 6.6 years ago by ▴ 240 • written 6.6 years ago by ▴ 410
11
votes
4
replies
12k
views
Haplotype Phasing with Shapeit2
ngs
updated 6.7 years ago by • 0 • written 8.3 years ago by ▴ 410
5
votes
8
replies
5.9k
views
6 follow
flagstats results show 0.0 % properly paired reads
next-gen alignment
updated 15 months ago by ▴ 20 • written 9.4 years ago by ▴ 410
2
votes
1
reply
5.9k
views
Answer: A: flagstats results show 0.0 % properly paired reads
6.8 years ago by SOHAIL ▴ 410
0
votes
1
reply
3.4k
views
tools for Population branch statistics (PBS)
selection scans ngs
updated 6.8 years ago by ▴ 670 • written 7.2 years ago by ▴ 410
1
vote
1
reply
11k
views
Comment: C: calculate Per variant Heterozygosity from VCF file
6.9 years ago by SOHAIL ▴ 410
20
votes
10
replies
11k
views
calculate Per variant Heterozygosity from VCF file
ngs vcf
updated 6.9 years ago by 88k • written 6.9 years ago by ▴ 410
3
votes
3
replies
5.2k
views
How to get adapter information from SRA dump FASTQ file??
next-gen
updated 7.1 years ago by 20k • written 8.5 years ago by ▴ 410
0
votes
0
replies
6.3k
views
Comment: C: Switch the position of REF/ALT alleles based on AA (ancestral allele) annotation
7.3 years ago by SOHAIL ▴ 410
0
votes
1
reply
6.3k
views
Comment: C: Switch the position of REF/ALT alleles based on AA (ancestral allele) annotation
7.3 years ago by SOHAIL ▴ 410
0
votes
0
replies
6.3k
views
Comment: C: Switch the position of REF/ALT alleles based on AA (ancestral allele) annotation
7.3 years ago by SOHAIL ▴ 410
5
votes
1
reply
4.4k
views
About Accessible Genome Mask
ngs 1000 genomes
updated 7.5 years ago by ▴ 50 • written 8.1 years ago by ▴ 410
0
votes
0
replies
2.4k
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PSMC analysis: input data processing, mutation rate, generation time
psmc
7.7 years ago by SOHAIL ▴ 410
0
votes
0
replies
13k
views
Comment: C: Generate Consensus sequence from BAM file
7.8 years ago by SOHAIL ▴ 410
0
votes
1
reply
13k
views
Answer: A: Generate Consensus sequence from BAM file
7.8 years ago by SOHAIL ▴ 410
3
votes
7
replies
13k
views
Generate Consensus sequence from BAM file
samtools mpileup psmc
7.8 years ago by SOHAIL ▴ 410
0
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0
replies
13k
views
Comment: C: Generate Consensus sequence from BAM file
7.8 years ago by SOHAIL ▴ 410
3
votes
3
replies
2.0k
views
comparing coordinates between two files
linux ngs
updated 7.8 years ago by 36k • written 7.8 years ago by ▴ 410
2
votes
1
reply
2.0k
views
Comment: C: comparing coordinates between two files
7.8 years ago by SOHAIL ▴ 410
0
votes
1
reply
5.9k
views
Comment: C: P-Value calculation from iHS and XP-EHH scores
7.8 years ago by SOHAIL ▴ 410
7
votes
4
replies
5.9k
views
P-Value calculation from iHS and XP-EHH scores
selection selscan ngs statistics R
updated 2.5 years ago by ▴ 20 • written 7.9 years ago by ▴ 410
1
vote
0
replies
3.6k
views
Comment: C: How to find variants that are common in one population but rare in others (popul
7.9 years ago by SOHAIL ▴ 410
0
votes
1
reply
3.6k
views
Comment: C: How to find variants that are common in one population but rare in others (popul
7.9 years ago by SOHAIL ▴ 410
6
votes
6
replies
3.6k
views
How to find variants that are common in one population but rare in others (population differentiation)?
SNP wgs variant filtration population genomics
7.9 years ago by SOHAIL ▴ 410
1
vote
0
replies
14k
views
Comment: C: How To Perform A Fst (Fixation Index) Calculation Over A Vcf File Using A Slidin
7.9 years ago by SOHAIL ▴ 410
0
votes
0
replies
11k
views
Comment: C: Principal Component Analysis using SNP data ste
8.1 years ago by SOHAIL ▴ 410
14
votes
4
replies
11k
views
Principal Component Analysis using SNP data ste
ngs PCA analysis
updated 8.1 years ago by 24k • written 8.1 years ago by ▴ 410
0
votes
3
replies
2.5k
views
How to combine variants??
ngs variant manioulation
updated 8.1 years ago by 47k • written 8.1 years ago by ▴ 410
0
votes
0
replies
2.5k
views
Comment: C: How to combine variants??
8.1 years ago by SOHAIL ▴ 410
1
vote
0
replies
3.8k
views
Comment: C: Determine the percentage of the human genome covered by the BED interval file
8.1 years ago by SOHAIL ▴ 410
0
votes
0
replies
3.8k
views
Comment: C: Determine the percentage of the human genome covered by the BED interval file
8.1 years ago by SOHAIL ▴ 410
6
votes
7
replies
3.8k
views
Determine the percentage of the human genome covered by the BED interval file
ngs genome
updated 8.1 years ago by 5.9k • written 8.1 years ago by ▴ 410
71 results • Page 1 of 2
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