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7
votes
6
replies
8.1k
views
7 follow
ATAC-seq +4 -5 shift
atac-seq
updated 14 months ago by 85k • written 4.7 years ago by ▴ 70
15
votes
2
replies
1.2k
views
Pooling animal samples to a lower number of replicates vs. sequencing a subgroup of the animal
experimental-design RNA-seq RRBS
updated 19 months ago by 20k • written 19 months ago by ▴ 70
0
votes
1
reply
4.1k
views
Comment: C: Why ranges of narrowPeak file and that of bed file are not identical
3.8 years ago by Jingyue ▴ 70
0
votes
2
replies
18k
views
Comment: C: DESeq2 compare all levels
3.8 years ago by Jingyue ▴ 70
0
votes
1
reply
18k
views
Comment: C: DESeq2 compare all levels
3.8 years ago by Jingyue ▴ 70
0
votes
0
replies
3.4k
views
Answer: A: Retrieve genomic physical coordinates of 3'UTR for set of genes
3.9 years ago by Jingyue ▴ 70
0
votes
0
replies
1.7k
views
Job: PhD assistantship in animal functional genomics and bioinformatics at Cornell
epigenetics functional-genomics next-gen
updated 17 months ago by 44k • written 4.0 years ago by ▴ 70
0
votes
1
reply
15k
views
Comment: C: ATAC-seq DE analysis
4.7 years ago by Jingyue ▴ 70
0
votes
1
reply
6.5k
views
Comment: C: ATAC-seq 150bp reads
4.8 years ago by Jingyue ▴ 70
0
votes
0
replies
5.2k
views
Comment: C: Running Cuffmerge error "duplicate/invalid 'transcript' "
updated 5.0 years ago by 44k • written 9.2 years ago by ▴ 70
0
votes
0
replies
3.6k
views
Comment: C: cutadapt cannot work on my fastq files
updated 5.0 years ago by 44k • written 9.3 years ago by ▴ 70
0
votes
1
reply
9.0k
views
Comment: C: Cuffmerge running error
updated 5.1 years ago by 44k • written 9.3 years ago by ▴ 70
0
votes
0
replies
9.2k
views
Comment: C: Differential Peaks Between Replicates
5.1 years ago by Jingyue ▴ 70
0
votes
1
reply
949
views
ChIP-seq differential binding analysis tools
ChIP-Seq Diffbind Csaw
5.1 years ago by Jingyue ▴ 70
0
votes
0
replies
6.0k
views
Comment: C: What is the best method ChIPseq differential binding analysis?
5.1 years ago by Jingyue ▴ 70
0
votes
2
replies
2.0k
views
Chip-seeker heatmap around the peak centers
ChIPseeker R
updated 5.2 years ago by 12k • written 5.3 years ago by ▴ 70
0
votes
0
replies
1.6k
views
Answer: A: Performing differential binding analyses between ChIP samples using Deeptools (S
5.3 years ago by Jingyue ▴ 70
0
votes
1
reply
2.8k
views
Comment: C: 2 peak files in plotAvgProf2 [ChIPseeker]
5.3 years ago by Jingyue ▴ 70
0
votes
0
replies
2.0k
views
Comment: C: Chip-seeker heatmap around the peak centers
5.3 years ago by Jingyue ▴ 70
0
votes
1
reply
2.7k
views
Comment: C: Using Diffbind R-studio
5.3 years ago by Jingyue ▴ 70
0
votes
0
replies
988
views
Downstream of Csaw differential binding region
ChIP-Seq csaw differential binding peaks
5.3 years ago by Jingyue ▴ 70
1
vote
0
replies
7.2k
views
Comment: C: HOMER annotatePeaks - No Annotations
5.4 years ago by Jingyue ▴ 70
0
votes
0
replies
8.8k
views
Comment: C: Extremely low mapping rates with bowtie2
5.6 years ago by Jingyue ▴ 70
0
votes
1
reply
8.0k
views
Comment: C: Sequence Bias Bismark Output Interpretation
7.2 years ago by Jingyue ▴ 70
0
votes
0
replies
3.7k
views
Comment: C: sc-WBGS library GC content, low bismark mapping rate, high CHH%
7.2 years ago by Jingyue ▴ 70
1
vote
2
replies
3.7k
views
sc-WBGS library GC content, low bismark mapping rate, high CHH%
wgbs gc content methylation
updated 7.3 years ago by ▴ 40 • written 7.3 years ago by ▴ 70
0
votes
0
replies
1.1k
views
extremely small value on cuffnorm fpkm table
RNA-Seq normalized-value cufflinks fpkm
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 70
1
vote
3
replies
5.2k
views
Running Cuffmerge error "duplicate/invalid 'transcript' "
RNA-Seq software-error
updated 2.3 years ago by 44k • written 9.3 years ago by ▴ 70
0
votes
1
reply
3.1k
views
Comment: Comment: Ensembl Gtf Cuffmerge Duplicates
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 70
0
votes
0
replies
1.4k
views
multiple mapping using tophat2
RNA-Seq
updated 2.9 years ago by 44k • written 9.3 years ago by ▴ 70
0
votes
0
replies
3.6k
views
Comment: C: cutadapt cannot work on my fastq files
9.3 years ago by Jingyue ▴ 70
2
votes
4
replies
3.6k
views
cutadapt cannot work on my fastq files
sequencing RNA-Seq
updated 2.7 years ago by 44k • written 9.3 years ago by ▴ 70
5
votes
1
reply
2.8k
views
Why Cuffdiff shows "no significant" expression difference in one of sample is 0 and another with a very high value?
Cufflinks RNA-Seq
updated 24 months ago by 44k • written 9.4 years ago by ▴ 70
33 results • Page 1 of 1
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