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Answer: Answer: Does comparing two different groups to a common third group introduce bias in th
6 months ago by christopher medway ▴ 460
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Answer: Answer: Introduce SNPs on FASTA
6 months ago by christopher medway ▴ 460
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Comment: Comment: Finding batch and outlayers
6 months ago by christopher medway ▴ 460
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Answer: A: Why is it important to control ethnicity when studying rare variants?
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 460
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Comment: C: How to remove the high correlated SNPs in R
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 460
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3.2k
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Answer: A: How to remove the high correlated SNPs in R
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 460
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Answer: A: Set-based test - PLINK
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 460
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Comment: C: Velvet Assembly Parameters
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 460
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Comment: Comment: Plink: how to recode SNP identifiers
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 460
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Answer: A: Plink: how to recode SNP identifiers
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 460
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Answer: A: Find region that full captures association signal
5.5 years ago by christopher medway ▴ 460
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pythonic equivalent to reduce() in R GRanges - how to collapse ranged data?
R python
updated 5.6 years ago by ▴ 970 • written 6.7 years ago by ▴ 460
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Answer: A: Change plink file for logistic in R
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 460
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1.3k
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Job: Clinical Bioinformatician (University Hospital of Wales, Cardiff, UK)
clinical-bioinformatics NGS
updated 20 months ago by 44k • written 6.2 years ago by ▴ 460
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Comment: C: pythonic equivalent to reduce() in R GRanges - how to collapse ranged data?
6.7 years ago by christopher medway ▴ 460
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1.9k
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Comment: C: Sorting the haplotypes by similarities of SNPs in R
6.8 years ago by christopher medway ▴ 460
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1.1k
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Answer: A: Parsing Coding Seq w grep
6.8 years ago by christopher medway ▴ 460
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5.9k
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Comment: C: mapping between gene symbol and entrez ID
6.8 years ago by christopher medway ▴ 460
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Answer: A: Loading PLINK files to Haploview
6.8 years ago by christopher medway ▴ 460
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Comment: C: Ranking of genes in multiple samples
6.8 years ago by christopher medway ▴ 460
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2.1k
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Comment: C: Ranking of genes in multiple samples
6.8 years ago by christopher medway ▴ 460
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Comment: C: gTEX normalize counts by genotype
7.0 years ago by christopher medway ▴ 460
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2.9k
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Answer: A: Gene synonyms/aliases - Is there a way to collect them programmatically
7.1 years ago by christopher medway ▴ 460
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Answer: A: p-value and FDR
7.1 years ago by christopher medway ▴ 460
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Answer: A: Bacterial genome annotation
7.1 years ago by christopher medway ▴ 460
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Comment: C: A confusion regarding haplotype
7.2 years ago by christopher medway ▴ 460
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2.0k
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Answer: A: A confusion regarding haplotype
7.2 years ago by christopher medway ▴ 460
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2.0k
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Comment: C: A confusion regarding haplotype
7.2 years ago by christopher medway ▴ 460
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3.1k
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Comment: C: Problem with LARGE MATRIX
7.3 years ago by christopher medway ▴ 460
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Answer: A: PCR : genes vs pseudogenes
7.3 years ago by christopher medway ▴ 460
2
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3.1k
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Answer: A: Help with Fisher test between drug-targets
7.3 years ago by christopher medway ▴ 460
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3.1k
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Comment: C: Help with Fisher test between drug-targets
7.3 years ago by christopher medway ▴ 460
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3.3k
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Comment: C: plink epistasis result
7.8 years ago by christopher medway ▴ 460
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3.3k
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Comment: C: plink epistasis result
7.8 years ago by christopher medway ▴ 460
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Answer: A: Replace vcf in-house variant IDs with dnSNP variant IDs
7.8 years ago by christopher medway ▴ 460
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3.4k
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Comment: C: Require help in using PLINK flags and scripts
7.8 years ago by christopher medway ▴ 460
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1.5k
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Answer: A: PLINK- chromosome ID disappears after running association tests
7.8 years ago by christopher medway ▴ 460
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Answer: A: Is there a quick method to extract regularly-spaced features/SNPs from a VCF fil
7.8 years ago by christopher medway ▴ 460
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Comment: C: finding the gene contain the snps ID
7.8 years ago by christopher medway ▴ 460
3
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1.4k
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Answer: A: finding the gene contain the snps ID
7.8 years ago by christopher medway ▴ 460
2
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2.8k
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Comment: C: Help with NGS analysis
7.9 years ago by christopher medway ▴ 460
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3.5k
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Answer: C: merging plink files
7.9 years ago by christopher medway ▴ 460
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9 follow
Forum: Bioinformatics in a clinical diagnostic setting versus research (academia)
genome SNP next-gen-sequencing
updated 19 months ago by 44k • written 7.9 years ago by ▴ 460
1
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4.8k
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Answer: A: Converting Vcf File To Maf
7.9 years ago by christopher medway ▴ 460
2
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2.8k
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Comment: C: how to Plot this figure with RNA-seq data using R?
7.9 years ago by christopher medway ▴ 460
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Comment: C: Plink : how to filter outliers for GWAS ?
8.0 years ago by christopher medway ▴ 460
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2.3k
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Comment: C: Minor allele frequency
8.0 years ago by christopher medway ▴ 460
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2.3k
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Comment: C: Minor allele frequency
8.0 years ago by christopher medway ▴ 460
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2.3k
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Comment: C: Minor allele frequency
8.0 years ago by christopher medway ▴ 460
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2.1k
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Comment: C: London, UK - Bioconductor and genome expert/graduate wanted for a day of teachin
8.0 years ago by christopher medway ▴ 460
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