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2
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18k
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Comment: C: how to choose optimal K in Consensus clustering
4.8 years ago by chris86 ▴ 400
0
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1
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2.0k
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Extraction of modules from networks generated using minet, e.g. CLR, MRNET, etc
RNA-Seq
updated 5.1 years ago by • 0 • written 8.8 years ago by ▴ 400
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13k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
5.2 years ago by chris86 ▴ 400
1
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1
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13k
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Answer: A: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
5.2 years ago by chris86 ▴ 400
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0
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2.3k
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Comment: C: pre-filtering expression data
5.4 years ago by chris86 ▴ 400
2
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1
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3.2k
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Answer: A: Quick way to Identify batch effect from covariates?
5.5 years ago by chris86 ▴ 400
6
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1
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11k
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Answer: A: Why do PCA+tSNE/viSNE or PCA+UMAP, and not just tSNE/viSNE or UMAP on their own?
5.5 years ago by chris86 ▴ 400
1
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0
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18k
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Comment: C: how to choose optimal K in Consensus clustering
5.5 years ago by chris86 ▴ 400
0
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0
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2.3k
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Comment: A: TopHat mapping error
5.6 years ago by chris86 ▴ 400
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0
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2.6k
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Comment: C: MSTRGs are plaguing my RNA-Seq analysis
5.6 years ago by chris86 ▴ 400
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1
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2.6k
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Comment: C: MSTRGs are plaguing my RNA-Seq analysis
5.6 years ago by chris86 ▴ 400
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0
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1.8k
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Comment: C: Stringtie merge generates close duplicates of original transcripts
5.7 years ago by chris86 ▴ 400
0
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0
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16k
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Comment: C: Tools To Do the Alternative Splicing Analysis
5.7 years ago by chris86 ▴ 400
2
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1
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16k
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Comment: C: Tools To Do the Alternative Splicing Analysis
5.7 years ago by chris86 ▴ 400
1
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0
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2.2k
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Answer: A: Unsupervised subtype discovery
5.7 years ago by chris86 ▴ 400
0
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0
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2.7k
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Answer: A: ConsensusClusterPlus for small sample
5.7 years ago by chris86 ▴ 400
0
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0
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1.3k
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Comment: C: Highly uneven RINs, mapping rates, and methods to deal with this (normalisation,
5.8 years ago by chris86 ▴ 400
2
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4
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1.3k
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Highly uneven RINs, mapping rates, and methods to deal with this (normalisation, salmon)
RNA-Seq salmon normalisation
5.8 years ago by chris86 ▴ 400
0
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0
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1.3k
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Comment: C: Highly uneven RINs, mapping rates, and methods to deal with this
5.8 years ago by chris86 ▴ 400
1
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0
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6.0k
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Comment: C: What Are Some Sanity Checks That Should Be Performed On Ngs Data?
5.8 years ago by chris86 ▴ 400
0
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0
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13k
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Comment: C: Outliers from RNA_seq data
5.8 years ago by chris86 ▴ 400
2
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0
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16k
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Answer: A: Tools To Do the Alternative Splicing Analysis
5.8 years ago by chris86 ▴ 400
2
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0
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19k
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Answer: A: why PCA for RNA-Seq but tSNE for scRNA-seq?
5.8 years ago by chris86 ▴ 400
0
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0
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1.0k
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Comment: C: Statistical comparison of expression of two _different_ genes
5.8 years ago by chris86 ▴ 400
0
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1
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1.0k
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Comment: C: Statistical comparison of expression of two _different_ genes
6.0 years ago by chris86 ▴ 400
2
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1
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2.2k
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Answer: A: problem for gene survival analysis through "Survival" package in R
updated 6.0 years ago by 44k • written 6.0 years ago by ▴ 400
1
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1
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2.2k
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Comment: C: problem for gene survival analysis through "Survival" package in R
6.0 years ago by chris86 ▴ 400
0
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0
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2.5k
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Answer: A: Best method to do clustering (sub-group) single cell RNA-Seq data?
6.0 years ago by chris86 ▴ 400
0
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1
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18k
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Comment: C: how to choose optimal K in Consensus clustering
6.2 years ago by chris86 ▴ 400
0
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2
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14k
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Comment: C: Heatmap : why scaling ?
6.3 years ago by chris86 ▴ 400
0
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1
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14k
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Comment: C: Heatmap : why scaling ?
6.3 years ago by chris86 ▴ 400
0
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1
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18k
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Comment: C: how to choose optimal K in Consensus clustering
6.3 years ago by chris86 ▴ 400
2
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4
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1.9k
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Find transcription factors that may regulate list of genes
gene
updated 6.5 years ago by ★ 1.7k • written 6.5 years ago by ▴ 400
2
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1
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38k
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Comment: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
7.9 years ago by chris86 ▴ 400
0
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0
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4.1k
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Answer: A: how to score the values in a dictionary in python
8.0 years ago by chris86 ▴ 400
0
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0
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1.4k
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Comment: C: Randomising gene expression data
8.0 years ago by chris86 ▴ 400
0
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0
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2.3k
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Comment: C: Python implementation for enrichment of terms on already annotated genes
8.0 years ago by chris86 ▴ 400
0
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1
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3.0k
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Comment: C: Search for reads aligned to multiple chromosomes
8.0 years ago by chris86 ▴ 400
1
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0
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3.2k
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Comment: C: Using Random Forest as a supervised cluster algorithm?
8.0 years ago by chris86 ▴ 400
0
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0
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2.1k
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Comment: C: Measure the correlation between genes
8.0 years ago by chris86 ▴ 400
1
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0
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12k
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Answer: A: Combining Microarray and RNAseq data
8.3 years ago by chris86 ▴ 400
1
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0
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1.6k
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Comment: C: R sharing code website for bioinformatics analysis
8.3 years ago by chris86 ▴ 400
0
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0
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3.0k
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Comment: C: Trimming adapters from miRNA-seq
8.3 years ago by chris86 ▴ 400
0
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0
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2.0k
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Comment: C: trouble with tophat
8.4 years ago by chris86 ▴ 400
1
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1
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2.0k
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Comment: C: trouble with tophat
8.4 years ago by chris86 ▴ 400
1
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0
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7.6k
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Comment: C: read trimming for small RNA NGS data
8.4 years ago by chris86 ▴ 400
0
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0
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7.6k
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Comment: C: read trimming for small RNA NGS data
8.4 years ago by chris86 ▴ 400
0
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1
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7.6k
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Comment: C: read trimming for small RNA NGS data
8.4 years ago by chris86 ▴ 400
0
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0
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2.3k
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Comment: C: FastQC on rna-seq data
8.4 years ago by chris86 ▴ 400
0
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0
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1.8k
views
Comment: C: Flexibility of inner distance parameter for Tophat
8.4 years ago by chris86 ▴ 400
68 results • Page 1 of 2
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