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7
votes
7
replies
7.3k
views
6 follow
Get BUSCO gene descriptions
BUSCO de novo assembly
updated 2.7 years ago by 45k • written 9.1 years ago by ▴ 250
0
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1
reply
936
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Comment: Comment: Asking for correction method for mRNA degradation bias
3.0 years ago by pbigbig ▴ 250
0
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3
replies
936
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Asking for correction method for mRNA degradation bias
mRNA Isoform switching RNASeq degradation
3.0 years ago by pbigbig ▴ 250
0
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0
replies
1.1k
views
Comment: Comment: Ranking genes based on importance rank from Random forest classifying model
3.4 years ago by pbigbig ▴ 250
1
vote
2
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1.1k
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Ranking genes based on importance rank from Random forest classifying model
selection random analysis feature forest transcriptome
3.4 years ago by pbigbig ▴ 250
0
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0
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1.7k
views
Comment: Comment: Pile up reads without reference?
3.4 years ago by pbigbig ▴ 250
0
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0
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1.7k
views
Comment: Comment: Pile up reads without reference?
3.4 years ago by pbigbig ▴ 250
0
votes
1
reply
1.7k
views
Comment: Comment: Pile up reads without reference?
3.4 years ago by pbigbig ▴ 250
1
vote
6
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1.7k
views
Pile up reads without reference?
mapping pileup visualization
3.4 years ago by pbigbig ▴ 250
0
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0
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2.5k
views
Comment: C: How do I specify single end Read in CIRCquant?
5.2 years ago by pbigbig ▴ 250
0
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0
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27k
views
Comment: C: Run multiple fastq.gz files with FastQC and yield single report?
updated 5.4 years ago by 45k • written 9.7 years ago by ▴ 250
0
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0
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4.9k
views
Comment: C: Problem: kmergenie has a minimum number of input of reads?
updated 5.4 years ago by 45k • written 9.8 years ago by ▴ 250
0
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0
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1.0k
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Comment: C: miRNA quantification on custom database
5.7 years ago by pbigbig ▴ 250
0
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2
replies
1.0k
views
miRNA quantification on custom database
miRNA RNA-Seq
5.7 years ago by pbigbig ▴ 250
1
vote
1
reply
7.3k
views
Comment: C: Get BUSCO gene descriptions
5.7 years ago by pbigbig ▴ 250
0
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1
reply
1.7k
views
Comment: C: Calculate scaling factor for RNAseq data
5.8 years ago by pbigbig ▴ 250
1
vote
6
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1.7k
views
Calculate scaling factor for RNAseq data
RNA-Seq normalization
updated 5.8 years ago by 14k • written 5.8 years ago by ▴ 250
0
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1
reply
1.7k
views
Comment: C: Calculate scaling factor for RNAseq data
5.8 years ago by pbigbig ▴ 250
0
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0
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17k
views
Comment: C: Clustering differences between heatmap.2 and pheatmap
5.9 years ago by pbigbig ▴ 250
0
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1
reply
6.8k
views
Comment: C: which matrix should be used to draw heatmap in RNAseq?
5.9 years ago by pbigbig ▴ 250
12
votes
5
replies
6.8k
views
which matrix should be used to draw heatmap in RNAseq?
RNAseq heatmap normalization
updated 3.1 years ago by ▴ 340 • written 5.9 years ago by ▴ 250
0
votes
1
reply
1.8k
views
Mapping both PE reads and Single-end reads into transcriptome
differential expression Trinity strand-specific
6.5 years ago by pbigbig ▴ 250
0
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0
replies
2.6k
views
Merging assemblies with GAM-NGS
platanus gam-ngs newbler
updated 2.7 years ago by 45k • written 9.3 years ago by ▴ 250
0
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0
replies
1.2k
views
Comment: C: Masking short sequences between gaps in genome assembly
6.7 years ago by pbigbig ▴ 250
0
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2
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1.2k
views
Masking short sequences between gaps in genome assembly
genome assembly masking
6.7 years ago by pbigbig ▴ 250
0
votes
1
reply
2.1k
views
extract SNPs corresponding position on BLAST subject sequence
SNP BLAST extract sequence
updated 7.4 years ago by 20 • written 7.5 years ago by ▴ 250
0
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0
replies
4.9k
views
Comment: C: Adding Domain Annotation Identifiers To Fasta Headers
7.6 years ago by pbigbig ▴ 250
1
vote
0
replies
3.4k
views
Comment: C: Merging BAM file before running GATK or merging vcf output
7.7 years ago by pbigbig ▴ 250
1
vote
2
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3.4k
views
Merging BAM file before running GATK or merging vcf output
GATK SNP vcf
updated 7.7 years ago by ★ 1.3k • written 7.7 years ago by ▴ 250
0
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1
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3.6k
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Answer: A: How to run Interproscan on cluster ?
8.0 years ago by pbigbig ▴ 250
0
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0
replies
1.6k
views
Comment: C: Transcriptomes comparison and check for shared transcripts with arbitrary simila
8.1 years ago by pbigbig ▴ 250
0
votes
2
replies
1.6k
views
Transcriptomes comparison and check for shared transcripts with arbitrary similarity
rnaseq transcriptome de novo assembly
8.1 years ago by pbigbig ▴ 250
0
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0
replies
2.8k
views
Comment: C: Confusion regarding Trinity analyze_diff_expr.pl
8.3 years ago by pbigbig ▴ 250
1
vote
2
replies
2.8k
views
Confusion regarding Trinity analyze_diff_expr.pl
Trinity Differential expression transcriptome
updated 8.3 years ago by ★ 3.4k • written 8.3 years ago by ▴ 250
1
vote
1
reply
14k
views
Comment: C: GC content calculation
8.4 years ago by pbigbig ▴ 250
20
votes
16
replies
14k
views
GC content calculation
GC content trinity transcriptome
updated 8.4 years ago by 20k • written 8.4 years ago by ▴ 250
1
vote
0
replies
14k
views
Comment: C: GC content calculation
8.4 years ago by pbigbig ▴ 250
0
votes
0
replies
14k
views
Comment: C: GC content calculation
8.4 years ago by pbigbig ▴ 250
0
votes
1
reply
2.3k
views
Comment: C: Gene Set Enrichment Analisys on Bioconductor?
8.4 years ago by pbigbig ▴ 250
1
vote
0
replies
7.3k
views
Comment: C: Tools for categorize COG/KOG list
8.5 years ago by pbigbig ▴ 250
6
votes
2
replies
7.3k
views
Tools for categorize COG/KOG list
KOGs COGs
updated 8.5 years ago by ★ 3.4k • written 8.5 years ago by ▴ 250
0
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1
reply
8.7k
views
Comment: C: Using COG database
8.5 years ago by pbigbig ▴ 250
0
votes
0
replies
4.4k
views
Comment: C: Cannot download gi list from NCBI protein
8.5 years ago by pbigbig ▴ 250
6
votes
12
replies
4.4k
views
Cannot download gi list from NCBI protein
ncbi nr
8.5 years ago by pbigbig ▴ 250
0
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0
replies
4.4k
views
Comment: C: Cannot download gi list from NCBI protein
8.5 years ago by pbigbig ▴ 250
0
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0
replies
4.4k
views
Comment: C: Cannot download gi list from NCBI protein
8.5 years ago by pbigbig ▴ 250
0
votes
1
reply
4.4k
views
Comment: C: Cannot download gi list from NCBI protein
8.5 years ago by pbigbig ▴ 250
0
votes
0
replies
9.1k
views
Comment: C: Extracting ids of a cluster in heatmap
8.6 years ago by pbigbig ▴ 250
0
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0
replies
9.1k
views
Comment: C: Extracting ids of a cluster in heatmap
8.6 years ago by pbigbig ▴ 250
3
votes
4
replies
9.1k
views
Extracting ids of a cluster in heatmap
pheatmap heatmap RNAseq
updated 8.6 years ago by 13k • written 8.6 years ago by ▴ 250
106 results • Page 1 of 3
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