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13
votes
25
replies
5.5k
views
7 follow
VEP output has no gene names
alignment sequencing vep
updated 22 months ago by ★ 2.4k • written 6.7 years ago by ▴ 240
0
votes
0
replies
2.1k
views
Comment: Comment: Bad quality fastq files for analysis
2.0 years ago by Gene_MMP8 ▴ 240
2
votes
6
replies
2.1k
views
Bad quality fastq files for analysis
quality bad DNA-seq fastq alignment
2.0 years ago by Gene_MMP8 ▴ 240
0
votes
0
replies
2.1k
views
Comment: Comment: Bad quality fastq files for analysis
2.1 years ago by Gene_MMP8 ▴ 240
2
votes
1
reply
769
views
Renormalize after row/column deletion from TPM data in RNA-seq
normalization TPM RNA-seq
updated 2.1 years ago by 87k • written 2.1 years ago by ▴ 240
0
votes
1
reply
883
views
Comment: Comment: Unable to validate biomarkers obtained from single-cell RNA-seq data
2.1 years ago by Gene_MMP8 ▴ 240
0
votes
3
replies
883
views
Unable to validate biomarkers obtained from single-cell RNA-seq data
biomarkers single-cell Seurat
updated 2.1 years ago by 87k • written 2.1 years ago by ▴ 240
0
votes
1
reply
4.9k
views
Comment: Comment: Sequence identity between two protein sequences
2.6 years ago by Gene_MMP8 ▴ 240
4
votes
3
replies
4.9k
views
Sequence identity between two protein sequences
Identity Protein
updated 2.6 years ago by 11k • written 2.6 years ago by ▴ 240
16
votes
11
replies
10.0k
views
6 follow
Samtools flagstat results
next-gen
updated 7 months ago by • 0 • written 7.6 years ago by ▴ 240
1
vote
0
replies
721
views
Gene ontology enrichment vs. REACTOME pathway analysis
GO REACTOME
2.8 years ago by Gene_MMP8 ▴ 240
0
votes
1
reply
1.3k
views
scRNA-seq analysis using TPM counts
RNA-seq TPM singlecell Seurat
updated 3.0 years ago by ▴ 110 • written 3.0 years ago by ▴ 240
0
votes
0
replies
828
views
Confusion regarding manual inclusion of read group information from fastq files
readgroup sequencing bwa fatsq
updated 3.4 years ago by 165k • written 3.4 years ago by ▴ 240
0
votes
0
replies
677
views
Separate vcf file creation for matched tumor-normal samples
vcf
3.6 years ago by Gene_MMP8 ▴ 240
1
vote
1
reply
852
views
Extract batch variable from GEO dataset
GEO batch_analysis microarray
updated 3.6 years ago by 87k • written 3.6 years ago by ▴ 240
0
votes
0
replies
595
views
Extract peptide information from proteomics data
proteomics peptide
3.6 years ago by Gene_MMP8 ▴ 240
0
votes
0
replies
562
views
Power calculation for microarray data
statistical_power microarray
3.6 years ago by Gene_MMP8 ▴ 240
0
votes
2
replies
6.2k
views
Comment: Comment: Manual annotation of cell types in single cell RNA-seq
3.7 years ago by Gene_MMP8 ▴ 240
3
votes
5
replies
6.2k
views
Manual annotation of cell types in single cell RNA-seq
Seurat single_cell annotation
updated 3.7 years ago by 9.0k • written 3.7 years ago by ▴ 240
2
votes
1
reply
1.2k
views
Why am I getting microRNA genes from a 10X genomics dataset?
RNA-seq microRNA
3.8 years ago by Gene_MMP8 ▴ 240
0
votes
0
replies
4.2k
views
Comment: Comment: remove Batch Effect between several **RNA-seq** studies (no replication)
3.9 years ago by Gene_MMP8 ▴ 240
0
votes
1
reply
1.1k
views
Comment: Comment: Normalizing across multiple RNA-seq datasets
3.9 years ago by Gene_MMP8 ▴ 240
1
vote
3
replies
1.1k
views
Normalizing across multiple RNA-seq datasets
RNASeq normalization
updated 3.9 years ago by 21k • written 3.9 years ago by ▴ 240
0
votes
1
reply
1.3k
views
Comment: C: Pathway analysis of a list of possible cancer driver genes
4.3 years ago by Gene_MMP8 ▴ 240
8
votes
4
replies
1.3k
views
Pathway analysis of a list of possible cancer driver genes
pathway analysis cancer driver genes
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 240
3
votes
2
replies
5.9k
views
Include gene ontology codes in the plots generated using the enrochplot package
functional enrichment analysis gsea enrichplot
updated 4.3 years ago by 87k • written 4.3 years ago by ▴ 240
0
votes
1
reply
1.3k
views
Types of base substitutions
genome SNP
4.4 years ago by Gene_MMP8 ▴ 240
1
vote
2
replies
3.6k
views
How to run bedtools from inside a python program
bedtools python commandline
updated 4.4 years ago by 22k • written 4.4 years ago by ▴ 240
1
vote
0
replies
3.5k
views
Comment: C: Batch effect removal with the help of sva
4.4 years ago by Gene_MMP8 ▴ 240
0
votes
1
reply
3.5k
views
Comment: C: Batch effect removal with the help of sva
4.4 years ago by Gene_MMP8 ▴ 240
0
votes
1
reply
3.5k
views
Comment: C: Batch effect removal with the help of sva
4.4 years ago by Gene_MMP8 ▴ 240
8
votes
6
replies
3.5k
views
Batch effect removal with the help of sva
SVA batch-effect gene-expression
updated 12 months ago by 45k • written 4.4 years ago by ▴ 240
0
votes
0
replies
805
views
Feature extraction pipeline for CHASMplus
CHASMplus
4.5 years ago by Gene_MMP8 ▴ 240
0
votes
1
reply
1.4k
views
Comment: C: Convert variant coordinates from one genome build to the other
4.5 years ago by Gene_MMP8 ▴ 240
2
votes
3
replies
1.4k
views
Convert variant coordinates from one genome build to the other
sequence variant genome_build
4.5 years ago by Gene_MMP8 ▴ 240
0
votes
1
reply
1.0k
views
Comment: C: Conserved regions around mutations
4.6 years ago by Gene_MMP8 ▴ 240
1
vote
3
replies
1.0k
views
Conserved regions around mutations
next-gen sequencing
4.6 years ago by Gene_MMP8 ▴ 240
3
votes
1
reply
1.7k
views
Effect of sample size on log fold change in gene expression analysis
RNA-Seq R
updated 4.9 years ago by ★ 7.3k • written 4.9 years ago by ▴ 240
1
vote
1
reply
749
views
Amino acid substitution to nucleotide substitution conversion
R sequencing
4.9 years ago by Gene_MMP8 ▴ 240
1
vote
1
reply
819
views
Similarity between DNA strings of two different classes
sequencing similarity
5.0 years ago by Gene_MMP8 ▴ 240
1
vote
2
replies
900
views
scRNA data for human muscle cells
RNA-Seq scRNA machinelearning
5.0 years ago by Gene_MMP8 ▴ 240
0
votes
1
reply
1.8k
views
Comment: C: How to download passenger mutations for cancer
5.1 years ago by Gene_MMP8 ▴ 240
0
votes
1
reply
1.8k
views
Comment: C: How to download passenger mutations for cancer
5.1 years ago by Gene_MMP8 ▴ 240
0
votes
1
reply
1.8k
views
Comment: C: How to download passenger mutations for cancer
5.1 years ago by Gene_MMP8 ▴ 240
6
votes
9
replies
1.8k
views
How to download passenger mutations for cancer
passenger mutations driver mutations cancer
updated 5.1 years ago by ▴ 1000 • written 5.1 years ago by ▴ 240
0
votes
0
replies
901
views
Unable to understand the input to the tablemaker tool
RNA-Seq software error
5.1 years ago by Gene_MMP8 ▴ 240
0
votes
0
replies
671
views
Common bioinformatics tools required to analyze the mutational distribution in mice genomes
genome next-gen
5.3 years ago by Gene_MMP8 ▴ 240
3
votes
5
replies
1.5k
views
Estimate gene expression data
gene
updated 5.3 years ago by 20 • written 6.1 years ago by ▴ 240
0
votes
2
replies
18k
views
Answer: A: Machine Learning For Cancer Classification - Part 3 - Predicting With A Random F
updated 5.4 years ago by 45k • written 9.7 years ago by ▴ 240
0
votes
0
replies
1.1k
views
Comment: C: Mutation calling for pediatric cancer data
5.4 years ago by Gene_MMP8 ▴ 240
250 results • Page 1 of 5
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