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0
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0
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4.7k
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Comment: Comment: filter BAM file for reads that map 100% identity
2.0 years ago by shinken123 ▴ 150
0
votes
2
replies
696
views
Add species name to a multiple alignment format (MAF) file
format names MAF species add name multiple alignment
written 2.4 years ago by ▴ 150
8
votes
4
replies
4.4k
views
GBS SNPs calling
GBS SAMTOOLS GATK FAST-GBS SNP calling
updated 2.7 years ago by ▴ 340 • written 7.8 years ago by ▴ 150
1
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1
reply
1.4k
views
vcftools 012 apparently is giving me wrong genotypes
vcftools 012
updated 3.0 years ago by ▴ 480 • written 3.0 years ago by ▴ 150
0
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0
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8.5k
views
Comment: Comment: 012 genotype matrix using vcf tools
3.0 years ago by shinken123 ▴ 150
0
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1
reply
1.0k
views
Popgenome nvalid sites
vcf Popgenome
3.3 years ago by shinken123 ▴ 150
0
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0
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1.0k
views
Answer: Answer: Popgenome nvalid sites
3.3 years ago by shinken123 ▴ 150
0
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0
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31k
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Comment: Comment: Filtering Fasta Sequences By Chromosomes Names From A Big Fasta File
3.4 years ago by shinken123 ▴ 150
0
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0
replies
639
views
remove from mummerplot some contigs
mummerplot mummer
3.6 years ago by shinken123 ▴ 150
1
vote
0
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46k
views
Comment: C: How to filter vcf file on minimum genotype depth and quality for each sample
3.7 years ago by shinken123 ▴ 150
0
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1
reply
11k
views
Comment: C: how is obtained the BED score values (the 5th column of the bed files) in BED fi
3.9 years ago by shinken123 ▴ 150
0
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0
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8.7k
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Comment: C: Fast LD computation from VCF files using tomahawk
4.3 years ago by shinken123 ▴ 150
0
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3
replies
2.2k
views
mapping quality for sanger reads
alignment
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 150
2
votes
4
replies
1.1k
views
Call CNVs using gene positions
CNVs sequencing read depth
updated 4.8 years ago by 20 • written 4.9 years ago by ▴ 150
0
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1
reply
1.1k
views
Comment: A: Call CNVs using gene positions
4.9 years ago by shinken123 ▴ 150
0
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1
reply
1.1k
views
Haplotype visualization from postion data
genome SNP sequence
updated 5.5 years ago by 20 • written 5.6 years ago by ▴ 150
0
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0
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843
views
Haploview Skipping block output: no valid blocks error
SNP software error
5.6 years ago by shinken123 ▴ 150
0
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0
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3.3k
views
Answer: A: Haploview error (Hapmap data format error)
5.6 years ago by shinken123 ▴ 150
0
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1
reply
3.3k
views
Comment: C: Haploview error (Hapmap data format error)
5.6 years ago by shinken123 ▴ 150
2
votes
1
reply
2.4k
views
Convert matrix in numeric format to genotype format
SNP
updated 6.0 years ago by 11k • written 6.0 years ago by ▴ 150
1
vote
0
replies
11k
views
Comment: C: calculate Per variant Heterozygosity from VCF file
6.0 years ago by shinken123 ▴ 150
0
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1
reply
11k
views
Comment: C: calculate Per variant Heterozygosity from VCF file
6.0 years ago by shinken123 ▴ 150
0
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1
reply
11k
views
Comment: C: calculate Per variant Heterozygosity from VCF file
6.0 years ago by shinken123 ▴ 150
15
votes
8
replies
12k
views
6 follow
Remove a list of positions form a VCF file
SNP vcf filter
updated 6.0 years ago by 12k • written 8.1 years ago by ▴ 150
0
votes
1
reply
5.8k
views
Hapmap to vcf
vcf hapmap
updated 16 months ago by 44k • written 6.2 years ago by ▴ 150
1
vote
2
replies
1.4k
views
obtain reference and base from read in a region from a bam file
alignment
updated 6.3 years ago by 20 • written 7.7 years ago by ▴ 150
1
vote
0
replies
2.0k
views
Calculation of heterozygosity
genome sequencing next-gen
6.4 years ago by shinken123 ▴ 150
0
votes
1
reply
1.3k
views
Perform of disco Snp with low coverage samples
discosnp low coverage SNP calling
updated 6.5 years ago by ▴ 900 • written 6.5 years ago by ▴ 150
0
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0
replies
1.5k
views
Comment: C: trying to reproduce mirbase blastn
6.7 years ago by shinken123 ▴ 150
0
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2
replies
1.5k
views
trying to reproduce mirbase blastn
blastn mirbase
6.7 years ago by shinken123 ▴ 150
2
votes
11
replies
3.8k
views
vcf-merge is giving me a few SNPs in the merged vcf file
snp
updated 7.0 years ago by ▴ 150 • written 8.1 years ago by ▴ 150
1
vote
2
replies
1.3k
views
Ontology gramene releases
Assembly gene
7.1 years ago by shinken123 ▴ 150
0
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0
replies
2.5k
views
bcftools consensus trying to apply the alternative allele if my sample is homozygous or heterozygous alternative for the site
SNP sequence
7.2 years ago by shinken123 ▴ 150
5
votes
1
reply
20k
views
Answer: Answer: Obtaining the top matches from blast
updated 3.1 years ago by 44k • written 7.3 years ago by ▴ 150
1
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0
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4.4k
views
Comment: A: GBS SNPs calling
7.8 years ago by shinken123 ▴ 150
0
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0
replies
1.6k
views
Comment: C: Obtain contex sequence from a vcf file
8.0 years ago by shinken123 ▴ 150
2
votes
2
replies
1.6k
views
Obtain contex sequence from a vcf file
snp sequence
updated 8.0 years ago by 164k • written 8.0 years ago by ▴ 150
0
votes
0
replies
12k
views
Comment: C: remove a list of positions form a vcf file
8.1 years ago by shinken123 ▴ 150
0
votes
0
replies
3.8k
views
Comment: C: vcf-merge is giving me a few SNPs in the merged vcf file
8.1 years ago by shinken123 ▴ 150
0
votes
0
replies
3.8k
views
Comment: C: vcf-merge is giving me a few SNPs in the merged vcf file
8.1 years ago by shinken123 ▴ 150
0
votes
0
replies
3.8k
views
Comment: C: vcf-merge is giving me a few SNPs in the merged vcf file
8.1 years ago by shinken123 ▴ 150
0
votes
2
replies
3.8k
views
Comment: C: vcf-merge is giving me a few SNPs in the merged vcf file
8.1 years ago by shinken123 ▴ 150
0
votes
1
reply
3.8k
views
Comment: C: vcf-merge is giving me a few SNPs in the merged vcf file
8.1 years ago by shinken123 ▴ 150
0
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0
replies
2.6k
views
Comment: C: chain file for maize
8.1 years ago by shinken123 ▴ 150
3
votes
2
replies
2.6k
views
chain file for maize
snp genome
updated 8.1 years ago by ★ 1.9k • written 8.1 years ago by ▴ 150
0
votes
0
replies
3.6k
views
Comment: C: Get a table of minor an major allele from a vcf file
8.1 years ago by shinken123 ▴ 150
0
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0
replies
3.6k
views
Comment: C: Get a table of minor an major allele from a vcf file
8.1 years ago by shinken123 ▴ 150
2
votes
6
replies
3.6k
views
Get a table of minor an major allele from a vcf file
SNP sequence genome
updated 8.2 years ago by ▴ 30 • written 8.2 years ago by ▴ 150
0
votes
0
replies
3.6k
views
Comment: C: Get a table of minor an major allele from a vcf file
8.2 years ago by shinken123 ▴ 150
0
votes
0
replies
2.9k
views
Comment: C: Bwa mem is giving me alignements that are causing noise in subsequent analysis.
8.5 years ago by shinken123 ▴ 150
58 results • Page 1 of 2
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