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Comment: Comment: fastplong: ultrafast preprocessing and quality control for long reads
7 months ago by chen ★ 2.5k
0
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Comment: Comment: fastplong: ultrafast preprocessing and quality control for long reads
7 months ago by chen ★ 2.5k
4
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12
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2.7k
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Tool: fastplong: ultrafast preprocessing and quality control for long reads
long-reads
updated 6 months ago by 15k • written 7 months ago by ★ 2.5k
9
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4
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3.3k
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7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 22 months ago by 45k • written 3.8 years ago by ★ 2.5k
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Tool: fastp 0.23.0 released, runs 2x faster, and generates reproducible outputs.
FASTQ
updated 3.7 years ago by 151k • written 3.7 years ago by ★ 2.5k
11
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2
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Tool: fastp (the ultra-fast all-in-one FASTQ preprocessing tool) v0.18.0 released, 2X faster, with many new features.
fastp QC
updated 24 months ago by 45k • written 7.0 years ago by ★ 2.5k
10
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Tutorial: introduce a tool for fast identification of SARS-CoV-2 and other microbes from sequencing data
SARS-CoV-2 fastv COVID-19
updated 2.3 years ago by 45k • written 5.2 years ago by ★ 2.5k
2
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1
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2.0k
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Tutorial: A very simple way to detect viruses and microorganisms from mNGS FASTQ data using fastv
SARS-CoV-2 fastv COVID-19 viruses
updated 2.3 years ago by 45k • written 5.1 years ago by ★ 2.5k
14
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11
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8.8k
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7 follow
Forum: Do you need a deduplication tool for FASTQ data in fastp?
deduplication fastp
updated 2.0 years ago by 45k • written 6.1 years ago by ★ 2.5k
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Answer: A: Machine learning based classification techniques
updated 5.6 years ago by 45k • written 9.1 years ago by ★ 2.5k
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0
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8.8k
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Comment: C: Do you need a deduplication tool for FASTQ data in fastp?
6.0 years ago by chen ★ 2.5k
0
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0
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8.8k
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Comment: C: Do you need a deduplication tool for FASTQ data in fastp?
6.0 years ago by chen ★ 2.5k
0
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0
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5.9k
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Answer: A: Find illumina adaptors
6.1 years ago by chen ★ 2.5k
2
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0
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6.4k
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Answer: A: How to blast a paired end fastq file?
6.1 years ago by chen ★ 2.5k
2
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0
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6.4k
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Comment: C: help in Language
6.1 years ago by chen ★ 2.5k
0
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1
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8.2k
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Comment: C: very confused with GC bias
6.1 years ago by chen ★ 2.5k
4
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1
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6.4k
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Answer: A: help in Language
6.1 years ago by chen ★ 2.5k
2
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0
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43k
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Answer: A: Generating consensus sequence from bam file
6.1 years ago by chen ★ 2.5k
0
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1
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1.5k
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Comment: C: How to evaluate correlation for multiple measurements per point?
6.1 years ago by chen ★ 2.5k
0
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1
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8.2k
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Answer: A: very confused with GC bias
6.1 years ago by chen ★ 2.5k
0
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3.0k
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Comment: C: VisualMSI: detect and visualize microsatellite instability(MSI) from NGS data
6.1 years ago by chen ★ 2.5k
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6.0k
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Comment: C: Reduce number of reads from 100M to 50M in the sample from the existing RNA-Seq
6.3 years ago by chen ★ 2.5k
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1
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6.0k
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Answer: A: Reduce number of reads from 100M to 50M in the sample from the existing RNA-Seq
6.4 years ago by chen ★ 2.5k
4
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2
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3.8k
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Tutorial: Introduce OpenGene: an open source library for processing NGS data
NGS sequencing Julia OpenGene
updated 2.3 years ago by 45k • written 9.3 years ago by ★ 2.5k
1
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3
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3.0k
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Tool: VisualMSI: detect and visualize microsatellite instability(MSI) from NGS data
MSI Visualization OpenGene Detection
updated 24 months ago by 45k • written 6.6 years ago by ★ 2.5k
3
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2
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4.1k
views
Answer: A: Programming language for Computational Biology
updated 6.7 years ago by 45k • written 9.3 years ago by ★ 2.5k
1
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0
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1.8k
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Comment: C: Can two mates have different file size?
6.8 years ago by chen ★ 2.5k
0
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0
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4.1k
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Comment: C: repaq: compress Illumina FASTQ to be as small as 1/4 of the gzip format.
6.9 years ago by chen ★ 2.5k
6
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2
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4.1k
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Tool: repaq: compress Illumina FASTQ to be as small as 1/4 of the gzip format.
repaq compress FASTQ
updated 24 months ago by 45k • written 6.9 years ago by ★ 2.5k
10
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2
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8.3k
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Tool: fastp, the ultra-fast FASTQ preprocessing tool, is now on BioConda
fastp
updated 2.3 years ago by 45k • written 7.4 years ago by ★ 2.5k
0
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Comment: C: quality trimming with trimmomatic
7.1 years ago by chen ★ 2.5k
0
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0
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5.1k
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Comment: C: gencore: a tool to reduce sequencing noises by generating consensus reads
7.1 years ago by chen ★ 2.5k
1
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1
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14k
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Answer: A: quality trimming with trimmomatic
7.1 years ago by chen ★ 2.5k
0
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0
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4.8k
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Answer: A: How to tell when NextSeq, HiSeq, and MiSeq are done?
7.1 years ago by chen ★ 2.5k
1
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1
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5.1k
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Comment: C: gencore: a tool to reduce sequencing noises by generating consensus reads
7.1 years ago by chen ★ 2.5k
3
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4
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5.1k
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Tutorial: gencore: a tool to reduce sequencing noises by generating consensus reads
consensus OpenGene sequencing-noise
updated 2.1 years ago by 45k • written 7.1 years ago by ★ 2.5k
0
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1
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2.2k
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Answer: A: Trimmomatic usage issue
7.2 years ago by chen ★ 2.5k
9
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17
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14k
views
7 follow
Can Illumina bcl2fastq use only one index for demultiplexing dual index sequencing data?
bcl2fastq demultiplexing index
updated 3.1 years ago by 4.1k • written 7.5 years ago by ★ 2.5k
4
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1
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21k
views
Answer: A: Open Source Bioinformatics projects for beginners
7.4 years ago by chen ★ 2.5k
0
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1
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3.4k
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Answer: A: how to adjust phred33 and phred64 in a fastq
7.4 years ago by chen ★ 2.5k
0
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0
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3.9k
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Comment: C: tumor/normal WGS with CNVkit has many small segments with small copy number chan
7.4 years ago by chen ★ 2.5k
7
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1
reply
18k
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Answer: A: what cause poly-G from NextSeq
7.4 years ago by chen ★ 2.5k
0
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0
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3.7k
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Comment: C: String matching algorithms of biological sequences
7.4 years ago by chen ★ 2.5k
1
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1
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3.7k
views
Answer: A: String matching algorithms of biological sequences
7.4 years ago by chen ★ 2.5k
1
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1
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6.4k
views
Answer: A: Faster reading sequences from a fastq file
7.4 years ago by chen ★ 2.5k
23
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19
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8.2k
views
10 follow
Tutorial: MutScan: Detect important mutations by scanning FastQ files directly
fastq mutation cancer target
updated 2.2 years ago by 45k • written 8.7 years ago by ★ 2.5k
0
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0
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9.2k
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Comment: C: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for f
7.4 years ago by chen ★ 2.5k
19
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14
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9.2k
views
7 follow
Tool: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
PolyG Quality-Control Filtering Fastq AfterQC
updated 24 months ago by 45k • written 9.1 years ago by ★ 2.5k
1
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0
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1.8k
views
Comment: C: SAMTOOLS installation errore
7.4 years ago by chen ★ 2.5k
1
vote
0
replies
29k
views
Comment: C: How to remove the empty line in using python
7.4 years ago by chen ★ 2.5k
221 results • Page 1 of 5
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