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Comment:
Comment: featureCounts cDNA vs DNA files
2.8 years ago by
Istvan Albert
102k
2
votes
1
reply
736
views
Answer:
Answer: unexpected output from efetch
2.8 years ago by
Istvan Albert
102k
0
votes
1
reply
1.7k
views
Comment:
Comment: Does the absence of BAI file just cause an algorithm to run slower or would it a
2.8 years ago by
Istvan Albert
102k
3
votes
1
reply
1.7k
views
Answer:
Answer: Does the absence of BAI file just cause an algorithm to run slower or would it a
2.8 years ago by
Istvan Albert
102k
0
votes
0
replies
965
views
Comment:
Comment: BWA generating a sam file without alignment information
2.8 years ago by
Istvan Albert
102k
2
votes
0
replies
1.5k
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Comment:
Comment: seqkit replace multifasta file
2.8 years ago by
Istvan Albert
102k
0
votes
1
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1.5k
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Comment:
Comment: seqkit replace multifasta file
2.8 years ago by
Istvan Albert
102k
0
votes
0
replies
1.9k
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Answer:
Answer: problem installing ucsc-bedgraphtobigwig
2.8 years ago by
Istvan Albert
102k
0
votes
0
replies
2.5k
views
Answer:
Answer: How to use samtools addreplacerg function to replace ID of the @RG line in the h
2.8 years ago by
Istvan Albert
102k
0
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0
replies
2.0k
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Answer:
Answer: Re-assembly assembled genomes
2.8 years ago by
Istvan Albert
102k
0
votes
1
reply
978
views
Answer:
Answer: DESeq2 on metagenomic gene abundance data, should I normalize for total sample d
2.8 years ago by
Istvan Albert
102k
1
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0
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735
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Comment:
Comment: NGS sequencing depth notation
2.8 years ago by
Istvan Albert
102k
1
vote
0
replies
1.6k
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Answer:
Answer: Best way to compare genome files similarity
2.8 years ago by
Istvan Albert
102k
0
votes
0
replies
829
views
Comment:
Comment: How many skipped exons is expected by chance?
2.8 years ago by
Istvan Albert
102k
0
votes
0
replies
767
views
Comment:
Comment: Why in Biomart Exon region start is before than Gene start?
2.8 years ago by
Istvan Albert
102k
0
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1
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767
views
Comment:
Comment: Why in Biomart Exon region start is before than Gene start?
2.8 years ago by
Istvan Albert
102k
1
vote
1
reply
829
views
Answer:
Answer: How many skipped exons is expected by chance?
2.8 years ago by
Istvan Albert
102k
0
votes
1
reply
2.5k
views
Comment:
Comment: Germline variant calling from BAM without reference
2.8 years ago by
Istvan Albert
102k
1
vote
1
reply
2.5k
views
Answer:
Answer: Germline variant calling from BAM without reference
2.8 years ago by
Istvan Albert
102k
2
votes
0
replies
598
views
Answer:
Answer: RNA transfer between human circulating cells and bacteria or contamination?
2.8 years ago by
Istvan Albert
102k
2
votes
1
reply
1.6k
views
Comment:
Comment: Usefulness of hypergeometric test in pathway enrichment analysis
2.8 years ago by
Istvan Albert
102k
2
votes
0
replies
1.9k
views
Answer:
Answer: What does it mean when a FASTA file has many "NNN's"?
2.8 years ago by
Istvan Albert
102k
1
vote
0
replies
1.6k
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Comment:
Comment: FASTQ/BAM Compression Tools
2.8 years ago by
Istvan Albert
102k
1
vote
0
replies
747
views
Answer:
Answer: How to evaluate which genome reference and alignment tool is "the best" for my p
2.8 years ago by
Istvan Albert
102k
1
vote
0
replies
2.1k
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Comment:
Comment: how to tell if data was log transformed
2.8 years ago by
Istvan Albert
102k
3
votes
0
replies
3.9k
views
Comment:
Comment: Understanding Supplementary reads.
2.8 years ago by
Istvan Albert
102k
1
vote
1
reply
3.9k
views
Comment:
Comment: Understanding Supplementary reads.
2.8 years ago by
Istvan Albert
102k
1
vote
1
reply
3.9k
views
Comment:
Comment: Understanding Supplementary reads.
2.8 years ago by
Istvan Albert
102k
0
votes
1
reply
1.8k
views
Answer:
Answer: Galaxy only showing single end data for paired end data with SRR download
2.8 years ago by
Istvan Albert
102k
0
votes
0
replies
559
views
Comment:
Comment: blast short sequence with multiple N bases
2.8 years ago by
Istvan Albert
102k
1
vote
0
replies
859
views
Answer:
Answer: How to specify the depth of sequencing in ion torrent?
2.8 years ago by
Istvan Albert
102k
0
votes
1
reply
1.8k
views
Comment:
Comment: Galaxy only showing single end data for paired end data with SRR download
2.8 years ago by
Istvan Albert
102k
0
votes
0
replies
824
views
Answer:
Answer: Merge two .fastq files from two different lane
2.8 years ago by
Istvan Albert
102k
2
votes
0
replies
3.4k
views
Answer:
Answer: Fastest way to parse through a fasta file in python
2.8 years ago by
Istvan Albert
102k
0
votes
1
reply
1.8k
views
Comment:
Comment: What are the pain points of using Genomics on the cloud today?
2.8 years ago by
Istvan Albert
102k
0
votes
0
replies
1.8k
views
Comment:
Comment: What are the pain points of using Genomics on the cloud today?
2.8 years ago by
Istvan Albert
102k
35
votes
13
replies
16k
views
9 follow
Tutorial:
How to get FASTQ reads from the Short Read Archive (SRA)
fastq
sra
updated 2.9 years ago by
liorglic
★ 1.5k • written 3.1 years ago by
Istvan Albert
102k
0
votes
1
reply
3.8k
views
Comment:
Comment: Asking for feedback on a Python library for computing alignments
2.9 years ago by
Istvan Albert
102k
1
vote
1
reply
3.8k
views
Comment:
Comment: Asking for feedback on a Python library for computing alignments
2.9 years ago by
Istvan Albert
102k
1
vote
1
reply
3.8k
views
Comment:
Comment: Asking for feedback on a Python library for computing alignments
2.9 years ago by
Istvan Albert
102k
2
votes
1
reply
3.8k
views
Answer:
Answer: Asking for feedback on a Python library for computing alignments
2.9 years ago by
Istvan Albert
102k
0
votes
0
replies
1.6k
views
Comment:
Comment: seqtk-trinity error
2.9 years ago by
Istvan Albert
102k
1
vote
0
replies
1.6k
views
Comment:
Comment: seqtk-trinity error
2.9 years ago by
Istvan Albert
102k
0
votes
0
replies
951
views
Comment:
Comment: Comparing repeatmasker outputs between species
2.9 years ago by
Istvan Albert
102k
2
votes
1
reply
2.4k
views
Answer:
Answer: How to retrieve a gene sequence from SRA file?
2.9 years ago by
Istvan Albert
102k
2
votes
0
replies
1.1k
views
Answer:
Answer: Does Bio.SeqIO from BioPython Convert .faa to .fasta?
2.9 years ago by
Istvan Albert
102k
1
vote
0
replies
977
views
Answer:
Answer: 50% Missed exons when trying to replicate annotation reference
2.9 years ago by
Istvan Albert
102k
1
vote
0
replies
1.4k
views
Answer:
Answer: Usability of depiction of individual reads in genome browser visualization
2.9 years ago by
Istvan Albert
102k
0
votes
0
replies
2.7k
views
Comment:
Comment: Extract from a .bam file the reads that map to specific area in the reference ge
2.9 years ago by
Istvan Albert
102k
3
votes
0
replies
4.1k
views
Answer:
Answer: iqtree vs raxml
2.9 years ago by
Istvan Albert
102k
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