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3
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1
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899
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Answer: Answer: Why do highly expressed genes vary more than lowly expressed genes?
2.4 years ago by Lior Pachter ▴ 700
1
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0
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2.1k
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Comment: Comment: Efficient querying of genomic reference databases with gget
2.6 years ago by Lior Pachter ▴ 700
4
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1
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2.1k
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Comment: Comment: Efficient querying of genomic reference databases with gget
2.6 years ago by Lior Pachter ▴ 700
2
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0
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2.1k
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Comment: Comment: fastq.gz download error
2.6 years ago by Lior Pachter ▴ 700
0
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1
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14k
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Comment: C: How to get read counts on transcript level using featurecounts?
4.8 years ago by Lior Pachter ▴ 700
1
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0
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14k
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Comment: C: How to get read counts on transcript level using featurecounts?
4.8 years ago by Lior Pachter ▴ 700
1
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0
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14k
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Comment: C: How to get read counts on transcript level using featurecounts?
4.8 years ago by Lior Pachter ▴ 700
0
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1
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14k
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Comment: C: How to get read counts on transcript level using featurecounts?
4.8 years ago by Lior Pachter ▴ 700
1
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0
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1.6k
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Comment: C: Kallisto in snakePipes instead of salmon
updated 4.9 years ago by 44k • written 4.9 years ago by ▴ 700
1
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0
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3.4k
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Comment: C: Cellranger data to Monocle Pseudotime
4.9 years ago by Lior Pachter ▴ 700
1
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1
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1.9k
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Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
5.0 years ago by Lior Pachter ▴ 700
14
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1
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38k
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Answer: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 5.1 years ago by 44k • written 9.3 years ago by ▴ 700
3
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0
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3.9k
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Answer: A: differential expression at transcript level with paired samples
updated 5.1 years ago by 44k • written 9.4 years ago by ▴ 700
2
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0
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5.8k
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Comment: C: RNA velocity on 5' 10x data?
5.2 years ago by Lior Pachter ▴ 700
2
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1
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936
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Answer: A: RNA-Seq quantification of a heterozygous individual with a short deletion
5.3 years ago by Lior Pachter ▴ 700
9
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1
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36k
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Answer: A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
5.3 years ago by Lior Pachter ▴ 700
0
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0
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4.2k
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Comment: C: Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
5.3 years ago by Lior Pachter ▴ 700
4
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1
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4.2k
views
Answer: A: Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
updated 5.3 years ago by 44k • written 5.3 years ago by ▴ 700
0
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1
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2.8k
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Comment: C: How to append R1(Barcode+UMI) to header of R2(Read data)
5.4 years ago by Lior Pachter ▴ 700
4
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0
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8.0k
views
Answer: A: about the use of CellRanger aggr
5.4 years ago by Lior Pachter ▴ 700
1
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1
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1.6k
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Comment: C: rnaseqcomp for own data withoutref genes
5.5 years ago by Lior Pachter ▴ 700
0
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0
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9.6k
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Comment: C: RNA-Seq: Getting Started with Kallisto
5.5 years ago by Lior Pachter ▴ 700
0
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3
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14k
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Answer: A: Build a Kallisto transcriptome index
5.5 years ago by Lior Pachter ▴ 700
0
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0
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1.8k
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Comment: C: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
5.5 years ago by Lior Pachter ▴ 700
2
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1
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9.6k
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Answer: A: RNA-Seq: Getting Started with Kallisto
5.5 years ago by Lior Pachter ▴ 700
3
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1
reply
4.5k
views
Comment: C: Which bias flags to run with Salmon before DESeq2 analysis?
updated 5.5 years ago by 44k • written 5.5 years ago by ▴ 700
2
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0
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3.8k
views
Answer: A: Dealing with 1000's of demultiplexed fastq files
5.5 years ago by Lior Pachter ▴ 700
1
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0
replies
5.5k
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Answer: A: UMI Tools Dedup
5.5 years ago by Lior Pachter ▴ 700
0
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0
replies
11k
views
Answer: A: Hardware requirement for RNA-seq
5.8 years ago by Lior Pachter ▴ 700
0
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1
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1.8k
views
Comment: C: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
6.3 years ago by Lior Pachter ▴ 700
1
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1
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20k
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Comment: C: RNA-Seq analysis using STAR and Salmon
7.3 years ago by Lior Pachter ▴ 700
1
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2
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3.9k
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Comment: C: Can anyone suggest a RShiny app for displaying RNA-seq results online
8.5 years ago by Lior Pachter ▴ 700
0
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0
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3.5k
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Comment: C: Estimating RPKM or TPM in RNA-Seq data
8.7 years ago by Lior Pachter ▴ 700
0
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1
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5.1k
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Comment: C: RNA-Seq for DE analysis
8.7 years ago by Lior Pachter ▴ 700
2
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1
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5.1k
views
Comment: C: RNA-Seq for DE analysis
8.7 years ago by Lior Pachter ▴ 700
0
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0
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3.8k
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Comment: C: RNA-seq mapper that allows variability and handles multi-mapping?
8.7 years ago by Lior Pachter ▴ 700
0
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0
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22k
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Comment: C: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
8.7 years ago by Lior Pachter ▴ 700
0
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0
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11k
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Comment: C: Kallisto New RNA-seq quantification method discussion
8.7 years ago by Lior Pachter ▴ 700
1
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0
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11k
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Comment: C: Kallisto New RNA-seq quantification method discussion
8.7 years ago by Lior Pachter ▴ 700
0
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0
replies
11k
views
Comment: C: Kallisto New RNA-seq quantification method discussion
8.7 years ago by Lior Pachter ▴ 700
0
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0
replies
11k
views
Comment: C: Kallisto New RNA-seq quantification method discussion
8.7 years ago by Lior Pachter ▴ 700
1
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0
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3.5k
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Answer: A: Assembly of transcripts of specific genes from the RNA-seq data
9.3 years ago by Lior Pachter ▴ 700
1
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0
replies
10k
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Comment: Comment: Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
updated 2.3 years ago by 44k • written 9.3 years ago by ▴ 700
1
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1
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3.2k
views
Answer: A: Differential expression in edgeR with cuffdiff count output
9.4 years ago by Lior Pachter ▴ 700
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