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3
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1
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1.1k
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Answer: Answer: Why do highly expressed genes vary more than lowly expressed genes?
2.9 years ago by Lior Pachter ▴ 720
1
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0
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2.6k
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Comment: Comment: Efficient querying of genomic reference databases with gget
3.0 years ago by Lior Pachter ▴ 720
4
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1
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2.6k
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Comment: Comment: Efficient querying of genomic reference databases with gget
3.0 years ago by Lior Pachter ▴ 720
2
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0
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2.6k
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Comment: Comment: fastq.gz download error
3.1 years ago by Lior Pachter ▴ 720
0
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1
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16k
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Comment: C: How to get read counts on transcript level using featurecounts?
5.3 years ago by Lior Pachter ▴ 720
1
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0
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16k
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Comment: C: How to get read counts on transcript level using featurecounts?
5.3 years ago by Lior Pachter ▴ 720
1
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0
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16k
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Comment: C: How to get read counts on transcript level using featurecounts?
5.3 years ago by Lior Pachter ▴ 720
0
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1
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16k
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Comment: C: How to get read counts on transcript level using featurecounts?
5.3 years ago by Lior Pachter ▴ 720
1
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0
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1.8k
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Comment: C: Kallisto in snakePipes instead of salmon
updated 5.4 years ago by 45k • written 5.4 years ago by ▴ 720
1
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0
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3.6k
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Comment: C: Cellranger data to Monocle Pseudotime
5.4 years ago by Lior Pachter ▴ 720
1
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1
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2.2k
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Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
5.4 years ago by Lior Pachter ▴ 720
14
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1
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40k
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Answer: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 5.6 years ago by 45k • written 9.8 years ago by ▴ 720
3
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0
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4.2k
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Answer: A: differential expression at transcript level with paired samples
updated 5.6 years ago by 45k • written 9.8 years ago by ▴ 720
2
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0
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6.3k
views
Comment: C: RNA velocity on 5' 10x data?
5.6 years ago by Lior Pachter ▴ 720
2
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1
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1.0k
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Answer: A: RNA-Seq quantification of a heterozygous individual with a short deletion
5.7 years ago by Lior Pachter ▴ 720
9
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1
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40k
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Answer: A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
5.7 years ago by Lior Pachter ▴ 720
0
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0
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4.5k
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Comment: C: Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
5.8 years ago by Lior Pachter ▴ 720
4
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1
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4.5k
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Answer: A: Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
updated 5.8 years ago by 45k • written 5.8 years ago by ▴ 720
0
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1
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3.0k
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Comment: C: How to append R1(Barcode+UMI) to header of R2(Read data)
5.8 years ago by Lior Pachter ▴ 720
6
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0
replies
9.1k
views
Answer: A: about the use of CellRanger aggr
5.9 years ago by Lior Pachter ▴ 720
1
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1
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1.7k
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Comment: C: rnaseqcomp for own data withoutref genes
5.9 years ago by Lior Pachter ▴ 720
0
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0
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11k
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Comment: C: RNA-Seq: Getting Started with Kallisto
5.9 years ago by Lior Pachter ▴ 720
0
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3
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16k
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Answer: A: Build a Kallisto transcriptome index
5.9 years ago by Lior Pachter ▴ 720
0
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0
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2.0k
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Comment: C: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
5.9 years ago by Lior Pachter ▴ 720
2
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1
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11k
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Answer: A: RNA-Seq: Getting Started with Kallisto
5.9 years ago by Lior Pachter ▴ 720
3
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1
reply
5.1k
views
Comment: C: Which bias flags to run with Salmon before DESeq2 analysis?
updated 6.0 years ago by 45k • written 6.0 years ago by ▴ 720
2
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0
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4.2k
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Answer: A: Dealing with 1000's of demultiplexed fastq files
6.0 years ago by Lior Pachter ▴ 720
1
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0
replies
6.0k
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Answer: A: UMI Tools Dedup
6.0 years ago by Lior Pachter ▴ 720
0
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0
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12k
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Answer: A: Hardware requirement for RNA-seq
6.3 years ago by Lior Pachter ▴ 720
0
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1
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2.0k
views
Comment: C: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
6.8 years ago by Lior Pachter ▴ 720
1
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1
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22k
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Comment: C: RNA-Seq analysis using STAR and Salmon
7.7 years ago by Lior Pachter ▴ 720
1
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2
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4.3k
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Comment: C: Can anyone suggest a RShiny app for displaying RNA-seq results online
8.9 years ago by Lior Pachter ▴ 720
0
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0
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3.8k
views
Comment: C: Estimating RPKM or TPM in RNA-Seq data
9.2 years ago by Lior Pachter ▴ 720
0
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1
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5.7k
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Comment: C: RNA-Seq for DE analysis
9.2 years ago by Lior Pachter ▴ 720
2
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1
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5.7k
views
Comment: C: RNA-Seq for DE analysis
9.2 years ago by Lior Pachter ▴ 720
0
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0
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4.0k
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Comment: C: RNA-seq mapper that allows variability and handles multi-mapping?
9.2 years ago by Lior Pachter ▴ 720
0
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0
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22k
views
Comment: C: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
9.2 years ago by Lior Pachter ▴ 720
0
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0
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12k
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Comment: C: Kallisto New RNA-seq quantification method discussion
9.2 years ago by Lior Pachter ▴ 720
1
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0
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12k
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Comment: C: Kallisto New RNA-seq quantification method discussion
9.2 years ago by Lior Pachter ▴ 720
0
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0
replies
12k
views
Comment: C: Kallisto New RNA-seq quantification method discussion
9.2 years ago by Lior Pachter ▴ 720
0
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0
replies
12k
views
Comment: C: Kallisto New RNA-seq quantification method discussion
9.2 years ago by Lior Pachter ▴ 720
1
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0
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3.6k
views
Answer: A: Assembly of transcripts of specific genes from the RNA-seq data
9.7 years ago by Lior Pachter ▴ 720
1
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0
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10k
views
Comment: Comment: Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
updated 2.7 years ago by 45k • written 9.8 years ago by ▴ 720
1
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1
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3.4k
views
Answer: A: Differential expression in edgeR with cuffdiff count output
9.8 years ago by Lior Pachter ▴ 720
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