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0
votes
1
reply
3.6k
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Comment: C: Cuffdiff terminated after GffObj::getSpliced() error
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 110
0
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0
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3.6k
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Comment: C: Cuffdiff terminated after GffObj::getSpliced() error
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 110
0
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0
replies
3.8k
views
Comment: C: Cuffdiff Error With Mouse Mm9 Genome Reference
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 110
0
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0
replies
6.5k
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Comment: C: Output files are empty after adapter trimming using trim galore
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 110
0
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0
replies
6.2k
views
Comment: C: output SAM file from STAR aligner looks incomplete
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 110
0
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1
reply
6.2k
views
Comment: C: output SAM file from STAR aligner looks incomplete
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 110
0
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0
replies
6.1k
views
Comment: C: Which aligner is best suited for circular human mitochondrial genome?
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 110
7
votes
4
replies
6.1k
views
Which aligner is best suited for circular human mitochondrial genome?
bowtie2 Assembly Alignment bwa
updated 2.6 years ago by 45k • written 9.3 years ago by ▴ 110
0
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1
reply
9.6k
views
Comment: C: Strand specific protocol for bowtie2 alignment
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 110
0
votes
0
replies
9.6k
views
Comment: C: Strand specific protocol for bowtie2 alignment
updated 5.3 years ago by 45k • written 9.4 years ago by ▴ 110
0
votes
1
reply
9.6k
views
Comment: C: Strand specific protocol for bowtie2 alignment
updated 5.3 years ago by 45k • written 9.4 years ago by ▴ 110
0
votes
1
reply
9.6k
views
Comment: C: Strand specific protocol for bowtie2 alignment
updated 5.3 years ago by 45k • written 9.4 years ago by ▴ 110
0
votes
1
reply
9.6k
views
Comment: C: Strand specific protocol for bowtie2 alignment
updated 5.3 years ago by 45k • written 9.4 years ago by ▴ 110
0
votes
2
replies
9.6k
views
Comment: C: Strand specific protocol for bowtie2 alignment
updated 5.3 years ago by 45k • written 9.4 years ago by ▴ 110
0
votes
1
reply
9.6k
views
Comment: C: Strand specific protocol for bowtie2 alignment
updated 5.3 years ago by 45k • written 9.4 years ago by ▴ 110
0
votes
1
reply
10k
views
Comment: C: Difference in htseq-count values for sorted bam and unsorted bam by name
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
10k
views
Comment: C: Difference in htseq-count values for sorted bam and unsorted bam by name
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
0
replies
4.0k
views
Comment: Comment: Difference in number of reads in tophat and htseq-count outputs
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
0
replies
14k
views
Comment: C: Counting number of genes using htseq-count tool.
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
14k
views
Comment: C: I have same samples in multiple lanes. What are all the steps to be taken before
updated 5.4 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
13
replies
14k
views
Counting number of genes using htseq-count tool.
RNA-Seq htseq count rna
updated 2.5 years ago by 45k • written 9.5 years ago by ▴ 110
1
vote
3
replies
4.0k
views
Difference in number of reads in tophat and htseq-count outputs
next-gen RNA-Seq ChIP-Seq sequence alignment
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 110
1
vote
4
replies
3.6k
views
Cuffdiff terminated after GffObj::getSpliced() error
cuffmerge cuffdiff RNASeq
updated 2.6 years ago by 45k • written 9.3 years ago by ▴ 110
0
votes
6
replies
6.5k
views
Output files are empty after adapter trimming using trim galore
trimgalore adapter trimming RNASeq
updated 2.6 years ago by 45k • written 9.3 years ago by ▴ 110
0
votes
1
reply
6.5k
views
Comment: C: Output files are empty after adapter trimming using trim galore
9.3 years ago by nalandaatmi ▴ 110
2
votes
6
replies
6.2k
views
output SAM file from STAR aligner looks incomplete
DNAseq alignment aligner STAR
updated 2.6 years ago by 45k • written 9.3 years ago by ▴ 110
6
votes
15
replies
9.6k
views
Strand specific protocol for bowtie2 alignment
bowtie2 rnaseq alignment RNA-Seq
updated 3.4 years ago by 45k • written 9.4 years ago by ▴ 110
0
votes
0
replies
2.1k
views
Comment: C: Observed and expected fastq header count different when merging two fastq files
9.4 years ago by nalandaatmi ▴ 110
1
vote
5
replies
2.1k
views
Observed and expected fastq header count different when merging two fastq files
RNA-Seq next-gen fastq
updated 2.6 years ago by 45k • written 9.4 years ago by ▴ 110
5
votes
5
replies
10k
views
Difference in htseq-count values for sorted bam and unsorted bam by name
RNA-Seq htseq-count sequencing SNP
updated 2.7 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
0
replies
2.0k
views
Answer: Answer: no accepted_hits.bam generated
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 110
1
vote
2
replies
2.2k
views
Have anyone worked with Genevar tool for eQTLs and mQTLs from sanger
next-gen variant-calling SNP software-error
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
12k
views
Comment: Comment: Error at the end of HT-seq Analysis and output.txt with 0 bytes in size
updated 4.0 years ago by 45k • written 9.5 years ago by ▴ 110
5
votes
5
replies
4.3k
views
How to interpret the difference among these three options in strandedness from HTSeq-count
RNA-Seq next-gen sequence alignment
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
12k
views
Comment: Comment: Error at the end of HT-seq Analysis and output.txt with 0 bytes in size
updated 4.0 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
12k
views
Comment: Comment: Error at the end of HT-seq Analysis and output.txt with 0 bytes in size
updated 4.0 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
12k
views
Comment: Comment: Error at the end of HT-seq Analysis and output.txt with 0 bytes in size
updated 4.0 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
0
replies
6.9k
views
Comment: Comment: How to extract sense and antisense read counts from mapping file (.bam) for RNA-
updated 3.1 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
0
replies
4.3k
views
Comment: Comment: How to interpret the difference among these three options in strandedness from H
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
12k
views
Comment: Comment: Error at the end of HT-seq Analysis and output.txt with 0 bytes in size
updated 4.0 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
14k
views
Comment: Comment: Counting number of genes using htseq-count tool.
updated 2.5 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
2
replies
14k
views
Comment: C: Counting number of genes using htseq-count tool.
9.5 years ago by nalandaatmi ▴ 110
0
votes
1
reply
14k
views
Comment: Comment: Counting number of genes using htseq-count tool.
updated 2.5 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
3.4k
views
Comment: Comment: How to do sequencing reads technical analysis and biological quality analysis fo
updated 2.5 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
14k
views
Comment: Comment: I have same samples in multiple lanes. What are all the steps to be taken before
updated 2.5 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
3.4k
views
Comment: Comment: How to do sequencing reads technical analysis and biological quality analysis fo
updated 2.5 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
0
replies
3.4k
views
Comment: C: How to do sequencing reads technical analysis and biological quality analysis fo
9.5 years ago by nalandaatmi ▴ 110
0
votes
0
replies
14k
views
Comment: Comment: I have same samples in multiple lanes. What are all the steps to be taken before
updated 2.5 years ago by 45k • written 9.5 years ago by ▴ 110
12
votes
9
replies
14k
views
I have same samples in multiple lanes. What are all the steps to be taken before downstream analysis?
fastq alignment next-gen-sequencing RNASeq
updated 2.5 years ago by 45k • written 9.5 years ago by ▴ 110
0
votes
1
reply
3.4k
views
Comment: Comment: How to do sequencing reads technical analysis and biological quality analysis fo
updated 2.5 years ago by 45k • written 9.5 years ago by ▴ 110
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