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0
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0
replies
656
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Local blast with multiple databases and multiple files
python Blast
3.8 years ago by akang ▴ 110
2
votes
3
replies
1.0k
views
Extracting amino acid positions from a fasta sequence
fasta python
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 110
0
votes
1
reply
1.5k
views
Calculate effective population size (Ne)
Ne Effective population size Sequence data
updated 3.9 years ago by ▴ 10 • written 6.2 years ago by ▴ 110
0
votes
1
reply
19k
views
Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
updated 5.0 years ago by 44k • written 8.7 years ago by ▴ 110
0
votes
2
replies
7.3k
views
How to plot LD decay?
LD r2
updated 5.5 years ago by 88k • written 8.5 years ago by ▴ 110
2
votes
0
replies
1.6k
views
Should the values of pairwise genetic distances and Fst be somewhat similar?
adegenet R
6.0 years ago by akang ▴ 110
0
votes
1
reply
1.5k
views
Change the font size of the Y axis of a boxplot
R adegenet boxplot
6.0 years ago by akang ▴ 110
0
votes
0
replies
1.3k
views
Within and between mean group genetic distance greater than 1 with MEGA X
genetic distance
6.0 years ago by akang ▴ 110
1
vote
3
replies
5.0k
views
Request for BEAGLE tutorial
beagle SNP
updated 3.2 years ago by 44k • written 9.0 years ago by ▴ 110
0
votes
0
replies
3.1k
views
Answer: A: Estimating heritability using GCTA or LDAK in an admixed population
7.3 years ago by akang ▴ 110
0
votes
0
replies
6.2k
views
Comment: C: How to calculate Imputation Accuracy Estimates like concordance with BEAGLE?
7.5 years ago by akang ▴ 110
11
votes
27
replies
3.8k
views
7 follow
Restructuring table: rows to column and interleaving columns
transpose SNP
7.5 years ago by akang ▴ 110
0
votes
1
reply
3.8k
views
Comment: A: Restructuring table: rows to column and interleaving columns
7.5 years ago by akang ▴ 110
0
votes
1
reply
3.8k
views
Comment: C: Restructuring table: rows to column and interleaving columns
7.5 years ago by akang ▴ 110
0
votes
0
replies
3.8k
views
Comment: C: Restructuring table: rows to column and interleaving columns
7.5 years ago by akang ▴ 110
0
votes
1
reply
3.8k
views
Comment: C: Restructuring table: rows to column and interleaving columns
7.5 years ago by akang ▴ 110
1
vote
1
reply
3.8k
views
Comment: C: Restructuring table: rows to column and interleaving columns
7.5 years ago by akang ▴ 110
1
vote
0
replies
3.8k
views
Comment: C: Converting rows to column
7.5 years ago by akang ▴ 110
1
vote
1
reply
3.8k
views
Comment: C: Converting rows to column
7.5 years ago by akang ▴ 110
0
votes
1
reply
2.8k
views
Convert beagle output file to plink
snp plink beagle
7.5 years ago by akang ▴ 110
0
votes
1
reply
44k
views
Comment: C: How To Analyze Imputed Gwas Data
7.9 years ago by akang ▴ 110
0
votes
0
replies
3.5k
views
How to determine the haplotypes using Beagle
Beagle SNP Haplotype
7.9 years ago by akang ▴ 110
1
vote
0
replies
3.3k
views
Comment: C: File conversion: lgen to ped and map
8.0 years ago by akang ▴ 110
6
votes
11
replies
7.7k
views
7 follow
Genotype count in a VCF file
SNP vcf
updated 8.1 years ago by 14k • written 8.1 years ago by ▴ 110
0
votes
2
replies
5.0k
views
How to check and extract if a SNP is heterozygous or homozygous in a vcf file from the SNP ID
VCF SNP
8.1 years ago by akang ▴ 110
0
votes
1
reply
2.3k
views
CNV calling and analysis from Affymetrix Axiom 50K SNP chip
SNP CNV PennCNV
updated 8.2 years ago by ▴ 10 • written 9.2 years ago by ▴ 110
0
votes
0
replies
10k
views
Comment: C: ./ Vs "0/0" In Vcf Files
8.3 years ago by akang ▴ 110
0
votes
0
replies
1.9k
views
extracting Individuals containing the SNP from a vcf file
SNP VCF
8.3 years ago by akang ▴ 110
0
votes
0
replies
4.0k
views
Comment: C: Converting 0 1 2 in a format recognized by plink
8.3 years ago by akang ▴ 110
0
votes
0
replies
4.0k
views
Answer: A: Converting 0 1 2 in a format recognized by plink
8.3 years ago by akang ▴ 110
0
votes
3
replies
4.0k
views
Converting 0 1 2 in a format recognized by plink
plink recode genotype
8.3 years ago by akang ▴ 110
0
votes
0
replies
3.8k
views
Comment: Comment: how to convert 012 data to ACTG data with plink?
8.3 years ago by akang ▴ 110
0
votes
0
replies
4.3k
views
Comment: C: Placing labels in the plot
8.3 years ago by akang ▴ 110
0
votes
0
replies
4.3k
views
Comment: C: Placing labels in the plot
8.3 years ago by akang ▴ 110
0
votes
4
replies
4.3k
views
Placing labels in the plot
R Admixture Plot Label
8.3 years ago by akang ▴ 110
9
votes
8
replies
9.0k
views
How to increase the resolution of the figures for publication
Publication Figures
8.3 years ago by akang ▴ 110
0
votes
0
replies
9.0k
views
Answer: A: How to increase the resolution of the figures for publication
8.3 years ago by akang ▴ 110
0
votes
0
replies
1.8k
views
Comment: C: Quantitative trait Association analysis of Animal genetic data
8.4 years ago by akang ▴ 110
0
votes
0
replies
1.7k
views
Comment: C: plink error: No nonmissing markers for individuals
8.5 years ago by akang ▴ 110
0
votes
0
replies
19k
views
Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
8.6 years ago by akang ▴ 110
0
votes
0
replies
2.9k
views
Deleting the Individuals from genlight/genind object in adegenet
SNP R
8.7 years ago by akang ▴ 110
0
votes
0
replies
5.6k
views
Comment: C: Estimating population genetic parameters from SNP (genotype) data
8.7 years ago by akang ▴ 110
0
votes
0
replies
2.0k
views
Answer: A: Genlight objects problem
8.7 years ago by akang ▴ 110
1
vote
0
replies
2.8k
views
Comment: C: Phylogenetic tree in Adegenet
8.7 years ago by akang ▴ 110
0
votes
1
reply
19k
views
Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
8.7 years ago by akang ▴ 110
2
votes
1
reply
2.8k
views
Phylogenetic tree in Adegenet
Adegenet Phylogenetic Tree Plink
8.7 years ago by akang ▴ 110
0
votes
0
replies
4.3k
views
Comment: C: Population-wise decay of linkage disequilibrium (LD)
8.7 years ago by akang ▴ 110
0
votes
1
reply
4.3k
views
Comment: C: Population-wise decay of linkage disequilibrium (LD)
8.7 years ago by akang ▴ 110
0
votes
4
replies
4.3k
views
Population-wise decay of linkage disequilibrium (LD)
Plink plot LD
8.7 years ago by akang ▴ 110
0
votes
1
reply
19k
views
Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
8.7 years ago by akang ▴ 110
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