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Comment: Comment: Trimmomatic: What is the difference between paired and unpaired output files in
25 days ago by Carlo Yague 8.9k
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310
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Answer: Answer: Problem in count Matrix from Featurecount
12 weeks ago by Carlo Yague 8.9k
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855
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
3 months ago by Carlo Yague 8.9k
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511
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Comment: Comment: GTF merging with gffcompare
3 months ago by Carlo Yague 8.9k
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511
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Answer: Answer: GTF merging with gffcompare
4 months ago by Carlo Yague 8.9k
2
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3
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855
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
4 months ago by Carlo Yague 8.9k
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556
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Comment: Comment: Confusion Regarding Tape Station Peak
5 months ago by Carlo Yague 8.9k
2
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2
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1.1k
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Comment: Comment: Gene enrichment tools options
7 months ago by Carlo Yague 8.9k
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1.1k
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Comment: Comment: Gene enrichment tools options
7 months ago by Carlo Yague 8.9k
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2.6k
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Comment: Comment: Good Bioinformatics Jokes/Puns?
7 months ago by Carlo Yague 8.9k
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800
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Comment: Comment: low Successfully assigned alignments
7 months ago by Carlo Yague 8.9k
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800
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Answer: Answer: low Successfully assigned alignments
7 months ago by Carlo Yague 8.9k
0
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899
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Answer: Answer: Strand-specific quantification of RNA-seq data without strand-aware mapping
8 months ago by Carlo Yague 8.9k
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388
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Comment: Comment: Subset of Transcripts- How do I proceed with it?
8 months ago by Carlo Yague 8.9k
2
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706
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Comment: Comment: Interpretting IGV output
10 months ago by Carlo Yague 8.9k
3
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1
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706
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Answer: Answer: Interpretting IGV output
10 months ago by Carlo Yague 8.9k
3
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1
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594
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Answer: Answer: p-value and Boneferroni adjusted p-value the same in R
10 months ago by Carlo Yague 8.9k
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1.3k
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Comment: Comment: Ciriquant not configuring hisat2 indexed files
10 months ago by Carlo Yague 8.9k
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1
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1.3k
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Comment: Comment: Ciriquant not configuring hisat2 indexed files
10 months ago by Carlo Yague 8.9k
2
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1
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1.3k
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Answer: Answer: Ciriquant not configuring hisat2 indexed files
10 months ago by Carlo Yague 8.9k
2
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1
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1.1k
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Answer: Answer: Weird Fragment Length distribution multiQC
11 months ago by Carlo Yague 8.9k
3
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652
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Answer: Answer: How is strandedness preserved with PCR (DNA/RNA-seq)
11 months ago by Carlo Yague 8.9k
4
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2
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3.6k
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Comment: Comment: How to convert raw Nanopore R9 fast5 files to fastq files ?
11 months ago by Carlo Yague 8.9k
1
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3.6k
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Answer: Answer: How to convert raw Nanopore R9 fast5 files to fastq files ?
11 months ago by Carlo Yague 8.9k
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1.6k
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Comment: Comment: Cannot find summary message after Bowtie2 mapping
16 months ago by Carlo Yague 8.9k
1
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2
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1.2k
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Answer: Answer: How to find coordinates of TSS from 5pUTR and TTS from 3pUTR in transcriptome/ m
21 months ago by Carlo Yague 8.9k
1
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2
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1.5k
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Answer: Answer: feature count command error
21 months ago by Carlo Yague 8.9k
1
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1.8k
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Comment: Comment: tophat2 installation error
21 months ago by Carlo Yague 8.9k
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992
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Comment: Comment: RPKM normalization
21 months ago by Carlo Yague 8.9k
0
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0
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778
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Comment: Comment: Chip-Seq data for RNA Polymerase 1
21 months ago by Carlo Yague 8.9k
2
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1
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992
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Answer: Answer: RPKM normalization
3 months ago by Carlo Yague 8.9k
3
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1
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1.0k
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Answer: Answer: ERCC normalization within DESeq2
21 months ago by Carlo Yague 8.9k
1
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1
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1.8k
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Answer: Answer: tophat2 installation error
21 months ago by Carlo Yague 8.9k
0
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0
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620
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Comment: Comment: Choosing a term to call my population of organisms for genetic studies
22 months ago by Carlo Yague 8.9k
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1
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2.1k
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Answer: Answer: extract gene coordinates and TSS from gene list
22 months ago by Carlo Yague 8.9k
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1
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736
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Answer: Answer: DESeq2 replicates in time course data
23 months ago by Carlo Yague 8.9k
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1
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811
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Comment: Comment: Fastq with very poor per tile quality but excellent perbase quality - is this a
2.3 years ago by Carlo Yague 8.9k
1
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1
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1.3k
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Answer: Answer: I have a question in Size-selection(SPRI) in ChIP-seq library preparation
2.4 years ago by Carlo Yague 8.9k
3
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816
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Answer: Answer: bedtools
2.5 years ago by Carlo Yague 8.9k
1
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1
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1.0k
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Answer: Answer: Problem with extracting reverse-reverse read pairs
2.5 years ago by Carlo Yague 8.9k
0
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0
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3.1k
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Answer: Answer: Supplementary alignments in BAM-file
2.6 years ago by Carlo Yague 8.9k
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2.5k
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Comment: Comment: How to convert strand specific RNASEQ bam to bigwig
2.8 years ago by Carlo Yague 8.9k
0
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0
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2.8k
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Comment: Comment: Normalization of RNASeq counts with a reference gene (/genes)
2.8 years ago by Carlo Yague 8.9k
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0
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1.2k
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Comment: Comment: finding coverage of bam file
2.8 years ago by Carlo Yague 8.9k
1
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2
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1.2k
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Answer: Answer: finding coverage of bam file
2.8 years ago by Carlo Yague 8.9k
0
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1
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842
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Answer: Answer: [bash] No result file is created after hisat2
2.8 years ago by Carlo Yague 8.9k
0
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0
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681
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Comment: Comment: how to use custom genome i.e. E. Coli in epic2 ?
2.8 years ago by Carlo Yague 8.9k
1
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1
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2.1k
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Comment: Comment: How to conclude two genome sequences have the same origin?
2.8 years ago by Carlo Yague 8.9k
1
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1
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2.1k
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Answer: Answer: How to conclude two genome sequences have the same origin?
2.8 years ago by Carlo Yague 8.9k
2
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0
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699
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Answer: Answer: Is it possible to find the mutation in RNA-seq reads?
2.8 years ago by Carlo Yague 8.9k
996 results • Page 1 of 20
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