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Comment: Comment: Bowtie2 no build the index
2.8 years ago by Carlo Yague 8.9k
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3.2k
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Answer: Answer: identify and remove adapter sequence
2.8 years ago by Carlo Yague 8.9k
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1.6k
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Answer: Answer: bamCoverage not generating BigWig output file when using for loop
2.8 years ago by Carlo Yague 8.9k
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2.2k
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Comment: Comment: GFF3 TO GTF CONVERSION
2.8 years ago by Carlo Yague 8.9k
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2
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4.5k
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Comment: Comment: How to perform normalization when converting ATAC bam file to bigwig file using
2.8 years ago by Carlo Yague 8.9k
2
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1
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4.5k
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Answer: Answer: How to perform normalization when converting ATAC bam file to bigwig file using
2.8 years ago by Carlo Yague 8.9k
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0
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1.2k
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Comment: Comment: Linux script for counting the length of a Protein fasta file .
2.9 years ago by Carlo Yague 8.9k
3
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982
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Answer: Answer: Deseq2
2.9 years ago by Carlo Yague 8.9k
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3
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1.3k
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Comment: Comment: BAM header edit with a list of amplicons
2.9 years ago by Carlo Yague 8.9k
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0
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1.7k
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Comment: Comment: gene body coverage interpretation
2.9 years ago by Carlo Yague 8.9k
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1.7k
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Comment: Comment: gene body coverage interpretation
2.9 years ago by Carlo Yague 8.9k
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1.4k
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Comment: Comment: Usability of depiction of individual reads in genome browser visualization
2.9 years ago by Carlo Yague 8.9k
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1.6k
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Comment: Comment: Difference in results from DESeq to EdgeR
2.9 years ago by Carlo Yague 8.9k
0
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1
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1.6k
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Comment: Comment: Difference in results from DESeq to EdgeR
2.9 years ago by Carlo Yague 8.9k
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2
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1.6k
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Comment: Comment: Difference in results from DESeq to EdgeR
2.9 years ago by Carlo Yague 8.9k
3
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2
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2.2k
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Answer: Answer: delete a file
2.9 years ago by Carlo Yague 8.9k
1
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1
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683
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Answer: Answer: different DEGs with different number of sample input.
2.9 years ago by Carlo Yague 8.9k
0
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0
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1.2k
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Comment: Comment: extract the all columns from 1 file giving a list of another file
2.9 years ago by Carlo Yague 8.9k
0
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1
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1.2k
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Comment: Comment: extract the all columns from 1 file giving a list of another file
2.9 years ago by Carlo Yague 8.9k
2
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1
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855
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Answer: Answer: Why is it hard to align longer DNA sequences?
2.9 years ago by Carlo Yague 8.9k
0
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1
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2.9k
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Comment: Comment: How to remove Illumina_small_rna_3'_adapter adapters without knowing their seque
2.9 years ago by Carlo Yague 8.9k
1
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2
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2.9k
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Comment: Comment: How to remove Illumina_small_rna_3'_adapter adapters without knowing their seque
2.9 years ago by Carlo Yague 8.9k
1
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1
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2.9k
views
Comment: Comment: How to remove Illumina_small_rna_3'_adapter adapters without knowing their seque
2.9 years ago by Carlo Yague 8.9k
1
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1
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1.1k
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Comment: Comment: P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
3.0 years ago by Carlo Yague 8.9k
2
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1
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1.1k
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Answer: Answer: P-value cut-off to identify SNPs at ChIP-seq peaks? [BedTools]
3.0 years ago by Carlo Yague 8.9k
0
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0
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2.2k
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Answer: Answer: DESeq2 comparisons using contrast
3.0 years ago by Carlo Yague 8.9k
3
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2
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2.4k
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Answer: Answer: Why all those reads in bam files were unmapped?
3.0 years ago by Carlo Yague 8.9k
0
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0
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732
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Answer: Answer: RiboZero RNA Seq vs Poly A RNA seq
3.0 years ago by Carlo Yague 8.9k
0
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0
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1.4k
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Comment: Comment: Duplication in DNA-seq vs RNA-seq
3.0 years ago by Carlo Yague 8.9k
0
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1
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1.4k
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Answer: Answer: Duplication in DNA-seq vs RNA-seq
3.0 years ago by Carlo Yague 8.9k
1
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1
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2.5k
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Answer: Answer: bubble plot of GO terms
3.0 years ago by Carlo Yague 8.9k
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0
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2.5k
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Comment: Comment: ggplot
3.0 years ago by Carlo Yague 8.9k
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0
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1.0k
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Comment: Comment: alignment using bowtie2
3.0 years ago by Carlo Yague 8.9k
1
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1
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1.0k
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Answer: Answer: alignment using bowtie2
3.0 years ago by Carlo Yague 8.9k
1
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0
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2.4k
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Comment: Comment: How does the DNA-seq machine know which strand that is forward/reverse?
3.0 years ago by Carlo Yague 8.9k
1
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2
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2.4k
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Comment: Comment: How does the DNA-seq machine know which strand that is forward/reverse?
3.0 years ago by Carlo Yague 8.9k
4
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2
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2.4k
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Answer: Answer: How does the DNA-seq machine know which strand that is forward/reverse?
3.0 years ago by Carlo Yague 8.9k
2
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0
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728
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Answer: Answer: In the NGS pipeline, why read are sorted before marking duplicates?
3.0 years ago by Carlo Yague 8.9k
0
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1
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2.0k
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Answer: Answer: Getting p-values for a proteomics dataset with repeated experiment results
3.0 years ago by Carlo Yague 8.9k
0
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0
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831
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Answer: Answer: Official/centralized/designated genetic/biological knowledge graph?
3.0 years ago by Carlo Yague 8.9k
1
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1
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1.3k
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Answer: Answer: Gene list for GO enrichment after DESeq2. Should I use a gene list of differenti
3.0 years ago by Carlo Yague 8.9k
0
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1
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1.9k
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Comment: Comment: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
3.0 years ago by Carlo Yague 8.9k
2
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1
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1.9k
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Answer: Answer: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
3.0 years ago by Carlo Yague 8.9k
3
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1
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1.2k
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Answer: Answer: Clarification request isoforms, redundancy, ortholog, paralog , divergence , con
3.0 years ago by Carlo Yague 8.9k
0
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1
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1.1k
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Answer: Answer: Transcript assemblers from RNA-seq reads - a request for tool recommendation
3.1 years ago by Carlo Yague 8.9k
3
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1
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6.1k
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Answer: Answer: Samfiles
3.1 years ago by Carlo Yague 8.9k
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0
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1.9k
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Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
3.1 years ago by Carlo Yague 8.9k
0
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1
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1.9k
views
Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
3.1 years ago by Carlo Yague 8.9k
1
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1
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1.9k
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Answer: Answer: calculate nucleotides frequencies from mapped reads in a BAM file
3.1 years ago by Carlo Yague 8.9k
2
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0
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1.1k
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Answer: Answer: How should I deal with my RNAseq result with high % of mutiple aligned reads?
3.1 years ago by Carlo Yague 8.9k
995 results • Page 3 of 20
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