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6
votes
11
replies
3.7k
views
Randomly select a number of variants and samples from a multi-sample VCF file (pVCF)
vcf pvcf
updated 4 months ago by 55k • written 23 months ago by ▴ 330
0
votes
2
replies
3.7k
views
Comment: Comment: Randomly select a number of variants and samples from a multi-sample VCF file (p
23 months ago by ' ▴ 330
1
vote
1
reply
3.7k
views
Comment: Comment: Randomly select a number of variants and samples from a multi-sample VCF file (p
23 months ago by ' ▴ 330
0
votes
4
replies
1.1k
views
RSeQC - does it make sense to run it on the genome BAM when alignment was to transcriptome with STAR?
star transcriptome genome rseqc qc
updated 2.7 years ago by 102k • written 2.7 years ago by ▴ 330
0
votes
1
reply
3.0k
views
Comment: Comment: RSEM BAM outputs, which one to use for RSeQC?
2.7 years ago by ' ▴ 330
0
votes
1
reply
1.1k
views
Comment: Comment: RSeQC - does it make sense to run it on the genome BAM when alignment was to tra
2.7 years ago by ' ▴ 330
0
votes
0
replies
5.3k
views
Comment: Comment: How to run STAR with multiple files
2.7 years ago by ' ▴ 330
2
votes
1
reply
547
views
Are Read Groups (@RG tags) important when using tools like STAR, Kallisto, and Salmon for alignment?
alignment rna-seq rg group read
updated 2.7 years ago by 86k • written 2.7 years ago by ▴ 330
0
votes
1
reply
1.2k
views
Comment: Comment: Common practice for aligning hundreds of FASTQ files? Would the resulting BAM fi
2.7 years ago by ' ▴ 330
1
vote
3
replies
1.2k
views
Common practice for aligning hundreds of FASTQ files? Would the resulting BAM files need to be merged into one? Is there any benefit to align 1000 sa…
fastq alignment bam rna-seq STAR
2.7 years ago by ' ▴ 330
0
votes
1
reply
1.8k
views
Comment: Comment: Does the absence of BAI file just cause an algorithm to run slower or would it a
2.8 years ago by ' ▴ 330
0
votes
0
replies
1.8k
views
Comment: Comment: Does the absence of BAI file just cause an algorithm to run slower or would it a
2.8 years ago by ' ▴ 330
4
votes
6
replies
1.8k
views
Does the absence of BAI file just cause an algorithm to run slower or would it also generate incorrect results? For example, why doesn't RSEM require…
bai alignment bam rsem gene-expression
updated 2.8 years ago by 102k • written 2.8 years ago by ▴ 330
0
votes
2
replies
42k
views
Comment: Comment: Will Python Take The Place Of R?
3.2 years ago by ' ▴ 330
3
votes
6
replies
3.4k
views
Velvet Assembly Parameters
velvet Assembly
updated 4.1 years ago by 20 • written 8.9 years ago by ▴ 330
10
votes
7
replies
3.0k
views
Understanding Kernel Ridge Regression for Drug-Target Interaction
kernel regression r ridge kernel trick
updated 4.2 years ago by ▴ 20 • written 8.6 years ago by ▴ 330
34
votes
8
replies
3.1k
views
9 follow
Forum: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv industry career
updated 18 months ago by 44k • written 5.2 years ago by ▴ 330
0
votes
2
replies
2.7k
views
Comment: C: What has happened to PatScan?
5.2 years ago by ' ▴ 330
0
votes
1
reply
2.7k
views
Comment: C: Is PatScan RNA pattern searcher no longer available as an online webtool?
5.2 years ago by ' ▴ 330
5
votes
1
reply
2.6k
views
How to model transcriptional networks from gene expression time-course data
R
updated 5.9 years ago by 20 • written 8.8 years ago by ▴ 330
0
votes
1
reply
4.5k
views
Answer: A: Normalized Smith-Waterman similarity score based on pairwise amino acids sequenc
6.4 years ago by ' ▴ 330
0
votes
1
reply
1.8k
views
Comment: C: Gene (mRNA) - Protein Interaction databases and prediction
6.4 years ago by ' ▴ 330
0
votes
3
replies
1.8k
views
Gene (mRNA) - Protein Interaction databases and prediction
ppi protein gene mrna databases
updated 6.4 years ago by ▴ 180 • written 6.4 years ago by ▴ 330
1
vote
5
replies
4.5k
views
Normalized Smith-Waterman similarity score based on pairwise amino acids sequence alignments
alignment
6.4 years ago by ' ▴ 330
2
votes
8
replies
1.5k
views
Classify, organize, and cluster a list of proteins / discovering relations between a set of proteins and linking them to disease
protein cluster
6.4 years ago by ' ▴ 330
0
votes
0
replies
1.5k
views
Comment: C: Classify, organize, and cluster a list of proteins / discovering relations betwe
6.4 years ago by ' ▴ 330
0
votes
0
replies
1.5k
views
Comment: C: Classify, organize, and cluster a list of proteins / discovering relations betwe
6.4 years ago by ' ▴ 330
3
votes
1
reply
13k
views
Answer: A: NCBI blast remote on specific species
6.8 years ago by ' ▴ 330
0
votes
0
replies
5.3k
views
Comment: C: Europe: Non-Paid Bioinformatics Internships/Training
6.8 years ago by ' ▴ 330
0
votes
0
replies
4.5k
views
Comment: C: Normalized Smith-Waterman similarity score based on pairwise amino acids sequenc
6.9 years ago by ' ▴ 330
3
votes
13
replies
2.7k
views
Is PatScan RNA pattern searcher no longer available as an online webtool?
RNA PatScan RNA pattern
7.3 years ago by ' ▴ 330
1
vote
1
reply
4.3k
views
Answer: A: Comparing contigs results from two different assembler
8.1 years ago by ' ▴ 330
6
votes
7
replies
4.3k
views
Comparing contigs results from two different assembler
Assembly
updated 2.4 years ago by 44k • written 8.9 years ago by ▴ 330
6
votes
6
replies
2.2k
views
7 follow
How relevant, valuable, and important is Information Visualization nowadays in Bioinformatics?
information-visualization infovis
updated 20 months ago by 44k • written 8.1 years ago by ▴ 330
5
votes
6
replies
3.4k
views
Non-Bioinformatics Jobs with a Bioinformatics Degree
career
updated 20 months ago by 44k • written 8.2 years ago by ▴ 330
6
votes
1
reply
2.4k
views
Normalized Smith-Waterman Formula
smith-waterman
updated 8.5 years ago by 20 • written 8.7 years ago by ▴ 330
3
votes
0
replies
2.6k
views
Answer: A: How to model transcriptional networks from gene expression time-course data
8.5 years ago by ' ▴ 330
0
votes
0
replies
3.1k
views
Comment: C: Perturbed vs. Unperturbed Models
8.6 years ago by ' ▴ 330
3
votes
2
replies
3.1k
views
Perturbed vs. Unperturbed Models
model
8.6 years ago by ' ▴ 330
0
votes
1
reply
3.0k
views
Comment: C: Understanding Kernel Ridge Regression for Drug-Target Interaction
8.6 years ago by ' ▴ 330
3
votes
2
replies
4.1k
views
Training and/or Master's Thesis at EMBL Heidelberg
embl
updated 8.6 years ago by 27k • written 8.6 years ago by ▴ 330
3
votes
1
reply
2.0k
views
How to tell if two different network models are statistically significantly different from one another?
graph
updated 8.6 years ago by 27k • written 8.6 years ago by ▴ 330
0
votes
1
reply
3.0k
views
Comment: C: Understanding Kernel Ridge Regression for Drug-Target Interaction
8.6 years ago by ' ▴ 330
0
votes
1
reply
3.6k
views
Comment: C: Kernel Ridge Regression in R for Drug-Target Interaction based on Kronecker Prod
8.6 years ago by ' ▴ 330
0
votes
1
reply
3.6k
views
Comment: C: Kernel Ridge Regression in R for Drug-Target Interaction based on Kronecker Prod
8.6 years ago by ' ▴ 330
0
votes
1
reply
3.6k
views
Comment: C: Kernel Ridge Regression in R for Drug-Target Interaction based on Kronecker Prod
8.7 years ago by ' ▴ 330
5
votes
7
replies
3.6k
views
Kernel Ridge Regression in R for Drug-Target Interaction based on Kronecker Products computed from Tanimoto Kernels and Smith-Waterman Scores
R machine learning kernel regression
updated 8.7 years ago by 27k • written 8.7 years ago by ▴ 330
0
votes
0
replies
2.4k
views
Comment: C: R - GOSemSim - mgeneSim / In is.na(go) : is.na() applied to non-(list or vector)
8.7 years ago by ' ▴ 330
3
votes
2
replies
2.4k
views
R - GOSemSim - mgeneSim / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
R GOSemSim mgeneSim
updated 8.7 years ago by 27k • written 8.7 years ago by ▴ 330
21
votes
12
replies
5.3k
views
9 follow
Job: Europe: Non-Paid Bioinformatics Internships/Training
internship career
updated 20 months ago by 44k • written 8.7 years ago by ▴ 330
67 results • Page 1 of 2
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