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4.8k
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From Cuffdiff Output to CummeRbund analysis/visualisation
RNA-Seq next-gen R
updated 2.9 years ago by 45k • written 9.7 years ago by ▴ 240
0
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1
reply
4.8k
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Comment: C: From Cuffdiff Output to CummeRbund analysis/visualisation
updated 5.6 years ago by 45k • written 9.7 years ago by ▴ 240
0
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0
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5.8k
views
Comment: C: Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,S
updated 5.6 years ago by 45k • written 9.7 years ago by ▴ 240
0
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0
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5.8k
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Answer: A: Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,S
updated 5.6 years ago by 45k • written 9.7 years ago by ▴ 240
0
votes
1
reply
4.7k
views
Comment: C: Installation of RCurl Setting LC_CTYPE failed, using "C" Error in dyn.load(file
updated 6.5 years ago by 45k • written 9.7 years ago by ▴ 240
0
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0
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4.7k
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Comment: C: Installation of RCurl Setting LC_CTYPE failed, using "C" Error in dyn.load(file
updated 6.5 years ago by 45k • written 9.7 years ago by ▴ 240
2
votes
4
replies
4.7k
views
Installation of RCurl Setting LC_CTYPE failed, using "C" Error in dyn.load(file, DLLpath = DLLpath, ...) :
R
updated 2.8 years ago by 45k • written 9.7 years ago by ▴ 240
3
votes
3
replies
5.8k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
RNA-Seq R
updated 2.8 years ago by 45k • written 9.7 years ago by ▴ 240
10
votes
7
replies
12k
views
How to get the alignment summary of HISAT2
RNA-Seq alignment next-gen
updated 7.3 years ago by ▴ 550 • written 9.1 years ago by ▴ 240
2
votes
2
replies
4.5k
views
bedGraphToBigWig genome size does not fit
alignment ChIP-Seq
updated 7.4 years ago by ▴ 10 • written 9.0 years ago by ▴ 240
0
votes
1
reply
2.4k
views
Comment: C: Verification of Global Reduction of Epigenetic Factors ?
8.1 years ago by Wet&DryImmunology ▴ 240
4
votes
4
replies
2.4k
views
Verification of Global Reduction of Epigenetic Factors ?
ChIP-Seq next-gen R
updated 8.1 years ago by 105k • written 8.1 years ago by ▴ 240
0
votes
0
replies
7.2k
views
Comment: C: What does "gappedPeak" mean
8.3 years ago by Wet&DryImmunology ▴ 240
10
votes
2
replies
7.2k
views
What does "gappedPeak" mean
ChIP-Seq macs2 Enocde
updated 8.3 years ago by 12k • written 8.3 years ago by ▴ 240
1
vote
2
replies
3.9k
views
Issue when trying to install 'RcppArmadillo': /usr/bin/ld: cannot find -lgfortran
ChIP-Seq software error
updated 8.3 years ago by 20 • written 8.4 years ago by ▴ 240
0
votes
0
replies
1.9k
views
Comment: C: Identification of commonly bound regions by TFs/histone modification/other featu
8.3 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
1.9k
views
Comment: C: Identification of commonly bound regions by TFs/histone modification/other featu
8.3 years ago by Wet&DryImmunology ▴ 240
1
vote
4
replies
1.9k
views
Identification of commonly bound regions by TFs/histone modification/other features
ChIP-Seq Bedtools sequence
updated 8.3 years ago by 7.6k • written 8.3 years ago by ▴ 240
0
votes
0
replies
3.9k
views
Comment: C: Issue when trying to install 'RcppArmadillo': /usr/bin/ld: cannot find -lgfortra
8.4 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
3.1k
views
Comment: C: Problem when trying to extract column value using "awk" from txt table
8.4 years ago by Wet&DryImmunology ▴ 240
0
votes
2
replies
3.1k
views
Comment: C: Problem when trying to extract column value using "awk" from txt table
8.4 years ago by Wet&DryImmunology ▴ 240
7
votes
7
replies
3.1k
views
Problem when trying to extract column value using "awk" from txt table
gene
8.4 years ago by Wet&DryImmunology ▴ 240
0
votes
0
replies
8.9k
views
Comment: C: Plot heatmap of differentially expressed genes identified by DESeq2 a R coding p
8.4 years ago by Wet&DryImmunology ▴ 240
5
votes
4
replies
8.9k
views
Plot heatmap of differentially expressed genes identified by DESeq2 a R coding problem
RNA-Seq R
8.4 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
6.3k
views
Comment: C: How to read in count data from matrix of read counts into Deseq2
8.4 years ago by Wet&DryImmunology ▴ 240
1
vote
3
replies
6.3k
views
How to read in count data from matrix of read counts into Deseq2
RNA-Seq R
updated 3.5 years ago by ▴ 10 • written 8.4 years ago by ▴ 240
0
votes
5
replies
4.9k
views
CummeRbund problem when creating gene sets: Error in sqliteSendQuery: rsqlite_query_send: could not execute1: cannot start a transaction within a tra…
RNA-Seq R CummeRbund software-error
updated 2.9 years ago by 45k • written 9.5 years ago by ▴ 240
0
votes
0
replies
2.4k
views
Comment: C: Bowtie2 alignment rate for 5hmC IP
8.9 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
2.4k
views
Comment: C: Bowtie2 alignment rate for 5hmC IP
8.9 years ago by Wet&DryImmunology ▴ 240
1
vote
4
replies
2.4k
views
Bowtie2 alignment rate for 5hmC IP
ChIP-Seq next-gen alignment sequencing
updated 8.9 years ago by 13k • written 8.9 years ago by ▴ 240
0
votes
1
reply
3.7k
views
Comment: C: Set classpath in Java for fastqc
8.9 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
3.7k
views
Comment: C: Set classpath in Java for fastqc
8.9 years ago by Wet&DryImmunology ▴ 240
1
vote
5
replies
3.7k
views
Set classpath in Java for fastqc
sequencing next-gen
8.9 years ago by Wet&DryImmunology ▴ 240
0
votes
0
replies
46k
views
Comment: C: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
8.9 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
46k
views
Comment: C: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
8.9 years ago by Wet&DryImmunology ▴ 240
4
votes
6
replies
4.6k
views
Visualization of ChIP-seq data (mapped reads)
ChIP-Seq alignment
updated 9.0 years ago by ★ 4.7k • written 9.0 years ago by ▴ 240
0
votes
1
reply
4.6k
views
Comment: C: Visualization of ChIP-seq data (mapped reads)
9.0 years ago by Wet&DryImmunology ▴ 240
0
votes
0
replies
5.8k
views
Comment: C: criteria for choosing proper parameters for MASC2 -- chip-seq ?
9.0 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
5.8k
views
Comment: C: criteria for choosing proper parameters for MASC2 -- chip-seq ?
9.0 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
5.8k
views
Answer: A: criteria for choosing proper parameters for MASC2 -- chip-seq ?
9.0 years ago by Wet&DryImmunology ▴ 240
0
votes
0
replies
5.8k
views
Comment: C: criteria for choosing proper parameters for MASC2 -- chip-seq ?
9.0 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
5.8k
views
Answer: A: criteria for choosing proper parameters for MASC2 -- chip-seq ?
9.0 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
1.9k
views
Library preparation for Ion Torrent Platforms
next-gen sequencing
9.0 years ago by Wet&DryImmunology ▴ 240
0
votes
0
replies
5.8k
views
Comment: C: BamTobw bedGraphToBigWig: command not found
9.1 years ago by Wet&DryImmunology ▴ 240
0
votes
0
replies
5.8k
views
Comment: C: BamTobw bedGraphToBigWig: command not found
9.1 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
5.8k
views
Comment: C: BamTobw bedGraphToBigWig: command not found
updated 9.1 years ago by 105k • written 9.1 years ago by ▴ 240
1
vote
6
replies
5.8k
views
BamTobw bedGraphToBigWig: command not found
software error alignment
9.1 years ago by Wet&DryImmunology ▴ 240
0
votes
1
reply
3.6k
views
Comment: C: How to get chromosomal coordinate of blasted genomic fragment?
9.1 years ago by Wet&DryImmunology ▴ 240
5
votes
3
replies
3.6k
views
How to get chromosomal coordinate of blasted genomic fragment?
blast alignment sequence gene genome
9.1 years ago by Wet&DryImmunology ▴ 240
1
vote
0
replies
12k
views
Comment: C: How to get the alignment summary of HISAT2
9.1 years ago by Wet&DryImmunology ▴ 240
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