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Issue with AMR gene identification using tools like CARD (RGI), abricate, Patric, ariba, amrfinderplus.
resistant-gene
updated 11 months ago by 45k • written 11 months ago by ▴ 110
0
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0
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657
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How to sort graph based on fold change and instead of activated and suppressed, how to add up and downregulated in graph header?
clusterprofiler
2.2 years ago by sharmatina189059 ▴ 110
1
vote
1
reply
772
views
parse csv file
awk csv
updated 2.3 years ago by 45k • written 2.4 years ago by ▴ 110
1
vote
1
reply
827
views
Weighted coexpression network analysis
Networkanalyst RNASeq database STRING R
updated 2.5 years ago by 11k • written 2.5 years ago by ▴ 110
0
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1
reply
1.3k
views
Comment: Comment: bash script error to copy files from multiple directories to one directory
updated 2.5 years ago by 45k • written 2.5 years ago by ▴ 110
1
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1
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1.3k
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Comment: Comment: bash script error to copy files from multiple directories to one directory
2.5 years ago by sharmatina189059 ▴ 110
4
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6
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1.3k
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bash script error to copy files from multiple directories to one directory
bash
updated 2.5 years ago by 45k • written 2.5 years ago by ▴ 110
0
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3
replies
1.9k
views
How to extract multi-line protein sequences with Ids present in headers ?
PERL awk Sed
updated 3.3 years ago by ▴ 330 • written 5.2 years ago by ▴ 110
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5
replies
2.9k
views
can we retrieve protein sequences from the clusters of CD-hit?
CD-Hit protein sequences
updated 3.5 years ago by ▴ 10 • written 4.4 years ago by ▴ 110
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0
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629
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how to plot genetic struture of bacterial genes?
bacteria plot gene
updated 3.8 years ago by 45k • written 3.9 years ago by ▴ 110
1
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0
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885
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plot Roary results for oan genome analysis
R Roary
updated 24 months ago by 45k • written 4.0 years ago by ▴ 110
0
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0
replies
639
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Operon Mapping
SLING operon Multigeneblast
4.1 years ago by sharmatina189059 ▴ 110
0
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0
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3.8k
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Comment: C: Calculate Dn/Ds for nucleotide sequences using codeml, hyphy or SNAP.
4.4 years ago by sharmatina189059 ▴ 110
0
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1
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3.8k
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Comment: C: Calculate Dn/Ds for nucleotide sequences using codeml, hyphy or SNAP.
4.4 years ago by sharmatina189059 ▴ 110
0
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1
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3.8k
views
Comment: C: Calculate Dn/Ds for nucleotide sequences using codeml, hyphy or SNAP.
4.4 years ago by sharmatina189059 ▴ 110
0
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6
replies
3.8k
views
Calculate Dn/Ds for nucleotide sequences using codeml, hyphy or SNAP.
Paml codeml SNAP hyphy
4.4 years ago by sharmatina189059 ▴ 110
0
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0
replies
700
views
codeml.txt file isnot generating.
Codeml paml dn/ds
4.4 years ago by sharmatina189059 ▴ 110
0
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0
replies
963
views
How to get variation data from MSA file generated using ClustalW for protein sequences?
clustalw MSA variation
updated 4.4 years ago by 20 • written 4.4 years ago by ▴ 110
6
votes
5
replies
1.9k
views
how to unique a file row-wise?
awk perl sed linux
updated 4.4 years ago by ★ 4.4k • written 4.4 years ago by ▴ 110
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0
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1.9k
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Comment: C: how to unique a file row-wise?
4.4 years ago by sharmatina189059 ▴ 110
0
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0
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1.9k
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Comment: C: how to unique a file row-wise?
4.4 years ago by sharmatina189059 ▴ 110
0
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2
replies
1.1k
views
How to read a multiple sequence alignment file?
Multiple-sequence-alignment
updated 2.1 years ago by 45k • written 4.4 years ago by ▴ 110
0
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1
reply
2.9k
views
Comment: C: can we retrieve protein sequences from the clusters of CD-hit?
updated 4.4 years ago by 45k • written 4.4 years ago by ▴ 110
4
votes
2
replies
1.4k
views
How Can I plot this data in a heatmap?
R Heatmap Pathways Uniprot
updated 4.6 years ago by 36k • written 4.6 years ago by ▴ 110
0
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0
replies
1.2k
views
Comment: C: Mapping a draft sequence to a finished sequence using MUMmer.
4.7 years ago by sharmatina189059 ▴ 110
0
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0
replies
1.2k
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Comment: C: Mapping a draft sequence to a finished sequence using MUMmer.
4.7 years ago by sharmatina189059 ▴ 110
0
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0
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1.2k
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Comment: A: Mapping a draft sequence to a finished sequence using MUMmer.
4.7 years ago by sharmatina189059 ▴ 110
0
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4
replies
1.2k
views
Mapping a draft sequence to a finished sequence using MUMmer.
MUMmer
4.7 years ago by sharmatina189059 ▴ 110
6
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10
replies
4.2k
views
Retrieve multi-line fasta sequences using list of locus tag
sequence
updated 4.8 years ago by • 0 • written 7.0 years ago by ▴ 110
0
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2
replies
1.0k
views
why this code is not deleting entries from mysql table?
php mysql
updated 4.9 years ago by 20 • written 5.0 years ago by ▴ 110
0
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0
replies
1.0k
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Comment: C: why this code is not deleting entries from mysql table?
5.0 years ago by sharmatina189059 ▴ 110
0
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2
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1.3k
views
Comment: C: One gene shows alignment with core sequences as well as with accessory gene sequ
5.2 years ago by sharmatina189059 ▴ 110
2
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4
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1.3k
views
One gene shows alignment with core sequences as well as with accessory gene sequences at 50% identity?
Pan-Genome with BPGA BPGA
updated 5.2 years ago by ★ 29k • written 5.2 years ago by ▴ 110
0
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1
reply
844
views
Comment: C: Why blast with same query sequence shows two different query length?
5.2 years ago by sharmatina189059 ▴ 110
0
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3
replies
844
views
Why blast with same query sequence shows two different query length?
blast
updated 5.2 years ago by 152k • written 5.2 years ago by ▴ 110
0
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0
replies
1.2k
views
Comment: C: Why Genome coverage is missing for some assemblies?
5.3 years ago by sharmatina189059 ▴ 110
0
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1
reply
1.2k
views
Comment: C: Why Genome coverage is missing for some assemblies?
5.3 years ago by sharmatina189059 ▴ 110
0
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1
reply
1.2k
views
Comment: C: Why Genome coverage is missing for some assemblies?
5.3 years ago by sharmatina189059 ▴ 110
0
votes
6
replies
1.2k
views
Why Genome coverage is missing for some assemblies?
next-gen Genome coverage
updated 5.3 years ago by 3.9k • written 5.3 years ago by ▴ 110
0
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0
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1.1k
views
Comment: C: automate command using bash or perl script?
5.4 years ago by sharmatina189059 ▴ 110
0
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4
replies
1.1k
views
automate command using bash or perl script?
assembly RAST PERL BASH
updated 5.4 years ago by 13k • written 5.4 years ago by ▴ 110
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0
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1.2k
views
Comment: C: Setting up local blast in webserver
5.4 years ago by sharmatina189059 ▴ 110
0
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1
reply
1.2k
views
Comment: C: Setting up local blast in webserver
5.4 years ago by sharmatina189059 ▴ 110
0
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4
replies
1.2k
views
Setting up local blast in webserver
BLAST PHP and MYSQL
5.4 years ago by sharmatina189059 ▴ 110
0
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0
replies
2.8k
views
Comment: C: Create Dataset from reads -- IndexError: list index out of range
5.5 years ago by sharmatina189059 ▴ 110
0
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0
replies
2.8k
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Comment: C: Create Dataset from reads -- IndexError: list index out of range
5.5 years ago by sharmatina189059 ▴ 110
0
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0
replies
2.8k
views
Comment: C: Create Dataset from reads -- IndexError: list index out of range
5.5 years ago by sharmatina189059 ▴ 110
0
votes
1
reply
2.0k
views
Pathway annotation using sequence alignment
alignment KEGG BLASTKOALA
updated 6.0 years ago by 20 • written 7.6 years ago by ▴ 110
0
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0
replies
1.2k
views
Pan-genome using BPGA
genome
6.0 years ago by sharmatina189059 ▴ 110
0
votes
0
replies
1.5k
views
Comment: C: Discriminating ortholog and paralogs using Cd-hit
6.4 years ago by sharmatina189059 ▴ 110
141 results • Page 1 of 3
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