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Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by I0110 ▴ 160
0
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1
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1.0k
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Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
8 months ago by I0110 ▴ 160
4
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7
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1.0k
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Can any JBrowse2 tracks show multiple colors for reads at different nucleotide positions?
JBrowse JBrowse2
updated 7 months ago by ★ 4.0k • written 8 months ago by ▴ 160
1
vote
1
reply
478
views
Tutorial: Parsing HMMER output
HMMER
updated 12 weeks ago by • 0 • written 8 months ago by ▴ 160
0
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1
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757
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Comment: Comment: Identifying syntenic gene pairs
16 months ago by I0110 ▴ 160
0
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3
replies
757
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Identifying syntenic gene pairs
Synteny
updated 16 months ago by ★ 2.5k • written 16 months ago by ▴ 160
0
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1
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617
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Pre-filtering of annotated isoforms based on splice junctions
RSEM isoforms splicing RNA-seq Kallisto
updated 17 months ago by ★ 2.5k • written 17 months ago by ▴ 160
0
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0
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1.1k
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Comment: Comment: JBrowse on GitHub (A question about file size)
22 months ago by I0110 ▴ 160
3
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4
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1.1k
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JBrowse on GitHub (A question about file size)
JBrowse GitHub
22 months ago by I0110 ▴ 160
0
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0
replies
808
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Comment: Comment: A question about STAR and SLURM
2.4 years ago by I0110 ▴ 160
3
votes
2
replies
808
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A question about STAR and SLURM
SLURM STAR
2.4 years ago by I0110 ▴ 160
12
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3
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918
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A question about code sharing for publication
code
updated 23 months ago by 44k • written 2.5 years ago by ▴ 160
0
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1
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22k
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Comment: Comment: Filtration Of Reads With Length Lower Than 30 From Bam
2.5 years ago by I0110 ▴ 160
0
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0
replies
537
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Understanding degradome-seq result
degradome
3.2 years ago by I0110 ▴ 160
0
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2
replies
26k
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Comment: C: Gene Set Enrichment Analysis
3.8 years ago by I0110 ▴ 160
0
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1
reply
26k
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Comment: A: Gene Set Enrichment Analysis
3.8 years ago by I0110 ▴ 160
2
votes
4
replies
1.7k
views
What is "Possible polymerase run-on fragment"?
transcriptome
updated 4.2 years ago by 44k • written 6.5 years ago by ▴ 160
2
votes
1
reply
3.8k
views
Thermo Xcalibur RAW data to MGF
mass spectrometry massspectrometry
updated 4.8 years ago by 20 • written 6.5 years ago by ▴ 160
6
votes
13
replies
5.6k
views
How to add the start and stop position information to a gff file?
genome R Assembly Python
updated 5.2 years ago by 8.9k • written 7.8 years ago by ▴ 160
0
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1
reply
2.7k
views
Comment: C: Nanopore data to gtf/gff file
5.4 years ago by I0110 ▴ 160
0
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0
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2.7k
views
Comment: C: Nanopore data to gtf/gff file
5.4 years ago by I0110 ▴ 160
1
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6
replies
2.7k
views
Nanopore data to gtf/gff file
sequencing assembly
updated 3.6 years ago by • 0 • written 5.4 years ago by ▴ 160
0
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1
reply
2.7k
views
Comment: C: Nanopore data to gtf/gff file
5.4 years ago by I0110 ▴ 160
7
votes
2
replies
1.6k
views
How to start a website with jbrowse to show sequencing data?
jbrowse
updated 6.1 years ago by 20 • written 6.2 years ago by ▴ 160
0
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1
reply
2.5k
views
How to merge mgf files?
Proteomics
updated 6.3 years ago by ▴ 180 • written 6.3 years ago by ▴ 160
0
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0
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1.7k
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Comment: C: What is "Possible polymerase run-on fragment"?
6.5 years ago by I0110 ▴ 160
0
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0
replies
3.3k
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Comment: C: transition to bioinformatics
6.5 years ago by I0110 ▴ 160
0
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1
reply
1.7k
views
Comment: C: What is "Possible polymerase run-on fragment"?
6.5 years ago by I0110 ▴ 160
0
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0
replies
1.8k
views
Comment: C: Possible polymerase run-on fragment (within 2Kbases of a reference transcript)
6.5 years ago by I0110 ▴ 160
1
vote
0
replies
2.2k
views
Comment: C: CDS prediction for newly assembled transcripts
6.5 years ago by I0110 ▴ 160
2
votes
2
replies
2.2k
views
CDS prediction for newly assembled transcripts
RNA-Seq transcriptome Assembly CDS
6.5 years ago by I0110 ▴ 160
0
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1
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2.4k
views
Comment: C: How to fix 5'UTR annotation with RNA-seq data?
6.7 years ago by I0110 ▴ 160
1
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3
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2.4k
views
How to fix 5'UTR annotation with RNA-seq data?
RNA-Seq
updated 6.8 years ago by ▴ 40 • written 6.8 years ago by ▴ 160
2
votes
1
reply
2.4k
views
Identify transcription start site using RNA-seq data
RNA-Seq
updated 6.8 years ago by ▴ 50 • written 6.8 years ago by ▴ 160
0
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0
replies
1.2k
views
Comment: C: The use of "and" in bioinformatics literature
6.9 years ago by I0110 ▴ 160
1
vote
2
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1.2k
views
The use of "and" in bioinformatics literature
Microarray
updated 6.9 years ago by ★ 2.0k • written 6.9 years ago by ▴ 160
7
votes
4
replies
2.6k
views
In the gff3 format, could one eukaryotic mRNA contain more than one protein coding sequences (i.e. polycistronic)?
gff3 annotation
6.9 years ago by I0110 ▴ 160
0
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0
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2.6k
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Comment: C: In gff3 format, could one eukaryotic mRNA contain more than one protein coding s
6.9 years ago by I0110 ▴ 160
0
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1
reply
2.6k
views
Comment: C: In gff3 format, could one eukaryotic mRNA contain more than one protein coding s
6.9 years ago by I0110 ▴ 160
0
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0
replies
1.0k
views
bed file to gtf/gff
genome annotation
7.2 years ago by I0110 ▴ 160
0
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1
reply
1.9k
views
Comment: C: Host bam file on MongoDB?
7.3 years ago by I0110 ▴ 160
0
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1
reply
1.9k
views
Comment: C: Host bam file on MongoDB?
7.3 years ago by I0110 ▴ 160
0
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1
reply
1.9k
views
Comment: C: Host bam file on MongoDB?
7.3 years ago by I0110 ▴ 160
1
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7
replies
1.9k
views
Host bam file on MongoDB?
MongoDB R
7.3 years ago by I0110 ▴ 160
0
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0
replies
2.8k
views
Comment: C: Homologs between tomato and Arabidopsis
7.4 years ago by I0110 ▴ 160
0
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1
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2.8k
views
Comment: C: Homologs between tomato and Arabidopsis
7.4 years ago by I0110 ▴ 160
6
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5
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2.8k
views
Homologs between tomato and Arabidopsis
genome homology
updated 7.4 years ago by 35k • written 7.4 years ago by ▴ 160
0
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0
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4.9k
views
Comment: C: Differential expression for two very different samples
7.4 years ago by I0110 ▴ 160
0
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0
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4.9k
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Comment: C: Differential expression for two very different samples
7.4 years ago by I0110 ▴ 160
15
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13
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4.9k
views
6 follow
Differential expression for two very different samples
RNA-Seq Statistics
updated 7.4 years ago by ★ 3.5k • written 7.4 years ago by ▴ 160
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