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8
votes
8
replies
25k
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Get gene length with R
R
updated 2.4 years ago by ▴ 80 • written 6.7 years ago by ▴ 150
6
votes
6
replies
7.5k
views
What batch correction was applied to pan-Cancer mRNA expression data?
TCGA pan-Cancer Atlas mRNA normalisation
updated 4.0 years ago by • 0 • written 6.1 years ago by ▴ 150
4
votes
11
replies
4.7k
views
Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
TCGA TCGAbiolinks GenomicDataCommons
updated 4.0 years ago by • 0 • written 6.6 years ago by ▴ 150
0
votes
1
reply
2.3k
views
Comment: C: How to read a gzipped VCF file from a R connection
4.1 years ago by user31888 ▴ 150
1
vote
3
replies
2.3k
views
How to read a gzipped VCF file from a R connection
R vcf
4.1 years ago by user31888 ▴ 150
1
vote
3
replies
2.8k
views
Comparing two differential expression experiments
differential expression DESeq
updated 4.4 years ago by 20 • written 8.0 years ago by ▴ 150
1
vote
0
replies
3.4k
views
Comment: C: Copy Number Analysis on single file
5.5 years ago by user31888 ▴ 150
4
votes
19
replies
3.7k
views
8 follow
Issues installing bcftools with GNU Scientific Library
bcftools zlib
updated 13 days ago by 3.1k • written 5.5 years ago by ▴ 150
0
votes
1
reply
3.4k
views
Comment: C: Copy Number Analysis on single file
5.5 years ago by user31888 ▴ 150
0
votes
1
reply
3.7k
views
Comment: C: Issues installing bcftools with GNU Scientific Library
5.5 years ago by user31888 ▴ 150
0
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1
reply
3.4k
views
Comment: C: Copy Number Analysis on single file
5.5 years ago by user31888 ▴ 150
0
votes
1
reply
3.4k
views
Comment: C: Copy Number Analysis on single file
5.5 years ago by user31888 ▴ 150
0
votes
1
reply
3.4k
views
Comment: C: Copy Number Analysis on single file
5.5 years ago by user31888 ▴ 150
0
votes
1
reply
3.4k
views
Comment: C: Copy Number Analysis on single file
5.5 years ago by user31888 ▴ 150
0
votes
1
reply
3.4k
views
Comment: C: Copy Number Analysis on single file
5.5 years ago by user31888 ▴ 150
0
votes
0
replies
3.4k
views
Comment: C: Copy Number Analysis on single file
5.5 years ago by user31888 ▴ 150
0
votes
1
reply
3.4k
views
Comment: C: Copy Number Analysis on single file
5.5 years ago by user31888 ▴ 150
1
vote
15
replies
3.4k
views
Copy Number Analysis on single file
CNV
updated 5.5 years ago by 89k • written 5.5 years ago by ▴ 150
0
votes
1
reply
2.6k
views
Comment: C: Divergent number of replicates between FastQC and samtools
5.7 years ago by user31888 ▴ 150
1
vote
1
reply
2.6k
views
Comment: C: Divergent number of replicates between FastQC and samtools
5.7 years ago by user31888 ▴ 150
9
votes
8
replies
2.6k
views
Divergent number of replicates between FastQC and samtools
fastqc STAR samtools
updated 5.7 years ago by 21k • written 5.7 years ago by ▴ 150
0
votes
0
replies
2.6k
views
Comment: C: Divergent number of replicates between FastQC and samtools
5.7 years ago by user31888 ▴ 150
0
votes
0
replies
1.5k
views
Comment: C: Normalisation of reference dataset for scRNA cell type annotation
5.8 years ago by user31888 ▴ 150
0
votes
1
reply
1.5k
views
Comment: C: Normalisation of reference dataset for scRNA cell type annotation
5.8 years ago by user31888 ▴ 150
0
votes
4
replies
1.5k
views
Normalisation of reference dataset for scRNA cell type annotation
scRNA scmap cell type Human Primary Cell Atlas
5.8 years ago by user31888 ▴ 150
2
votes
10
replies
3.7k
views
Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
single cell demultiplexing
5.9 years ago by user31888 ▴ 150
0
votes
1
reply
3.7k
views
Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
5.9 years ago by user31888 ▴ 150
0
votes
1
reply
3.7k
views
Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
5.9 years ago by user31888 ▴ 150
0
votes
0
replies
3.7k
views
Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
5.9 years ago by user31888 ▴ 150
0
votes
0
replies
3.7k
views
Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
5.9 years ago by user31888 ▴ 150
0
votes
0
replies
6.8k
views
Answer: A: PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA dataset
5.9 years ago by user31888 ▴ 150
0
votes
0
replies
7.5k
views
Comment: C: What batch correction was applied to pan-Cancer mRNA expression data?
6.1 years ago by user31888 ▴ 150
0
votes
1
reply
7.5k
views
Comment: C: What batch correction was applied to pan-Cancer mRNA expression data?
6.1 years ago by user31888 ▴ 150
0
votes
1
reply
8.1k
views
Comment: C: How to normalize median-center log-transform an expression matrix
6.2 years ago by user31888 ▴ 150
1
vote
3
replies
8.1k
views
How to normalize median-center log-transform an expression matrix
R RNA-Seq
6.2 years ago by user31888 ▴ 150
0
votes
1
reply
4.7k
views
Comment: C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
6.6 years ago by user31888 ▴ 150
0
votes
1
reply
4.7k
views
Comment: C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
6.6 years ago by user31888 ▴ 150
0
votes
0
replies
2.3k
views
Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
6.6 years ago by user31888 ▴ 150
0
votes
0
replies
2.3k
views
Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
6.6 years ago by user31888 ▴ 150
0
votes
2
replies
2.3k
views
Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
6.6 years ago by user31888 ▴ 150
0
votes
1
reply
2.3k
views
Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
6.6 years ago by user31888 ▴ 150
0
votes
7
replies
2.3k
views
Convert GDCResults object (nested lists) to a human readable data frame
GenomicDataCommon R list data frame
6.6 years ago by user31888 ▴ 150
0
votes
0
replies
3.0k
views
Comment: C: featureCount vs GENCODE gene lengths
6.6 years ago by user31888 ▴ 150
3
votes
4
replies
3.0k
views
featureCount vs GENCODE gene lengths
featureCount GENCODE
updated 6.6 years ago by 24k • written 6.6 years ago by ▴ 150
0
votes
0
replies
3.0k
views
Comment: C: featureCount vs GENCODE gene lengths
6.6 years ago by user31888 ▴ 150
0
votes
0
replies
25k
views
Comment: C: Get gene length with R
6.7 years ago by user31888 ▴ 150
0
votes
1
reply
25k
views
Comment: C: Get gene length with R
6.7 years ago by user31888 ▴ 150
0
votes
1
reply
25k
views
Comment: C: Get gene length with R
6.7 years ago by user31888 ▴ 150
0
votes
1
reply
11k
views
Comment: C: Normalization scaling factors: formula for applying them to raw counts
6.7 years ago by user31888 ▴ 150
2
votes
1
reply
6.2k
views
strand bias filtering with bcftools
bcftools samtools Phred
updated 7.0 years ago by 89k • written 7.9 years ago by ▴ 150
84 results • Page 1 of 2
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