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5
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0
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17k
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Comment: Comment: How to use FindSubCluster in Seurat?
3.4 years ago by Pietro ▴ 240
0
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1
reply
1.8k
views
Are singscore scores comparable between gene sets?
singscore GSVA GSEA subtypes genesets
updated 5.2 years ago by • 0 • written 5.7 years ago by ▴ 240
0
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0
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5.7k
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Comment: C: How to proceed after removing batch effect with limma?
5.4 years ago by Pietro ▴ 240
0
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0
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3.1k
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Comment: C: Question about gene ontology data visualization
5.4 years ago by Pietro ▴ 240
1
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1
reply
5.7k
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Answer: A: How to proceed after removing batch effect with limma?
5.4 years ago by Pietro ▴ 240
0
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2
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3.1k
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Answer: A: Question about gene ontology data visualization
5.4 years ago by Pietro ▴ 240
0
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2
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8.2k
views
Comment: C: z score transformation by population or by gene?
5.5 years ago by Pietro ▴ 240
0
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1
reply
8.2k
views
Comment: C: z score transformation by population or by gene?
5.5 years ago by Pietro ▴ 240
1
vote
6
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8.2k
views
z score transformation by population or by gene?
z score RNA-Seq microarray transformation
updated 5.5 years ago by 88k • written 5.5 years ago by ▴ 240
0
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0
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1.2k
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Comment: C: How to normalize NCI-60 gene expression data
5.6 years ago by Pietro ▴ 240
0
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1
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5.3k
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Comment: C: Fold change cut off enrichment analysis
5.6 years ago by Pietro ▴ 240
2
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4
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5.3k
views
Fold change cut off enrichment analysis
RNA-Seq enrichment ontology fold change cutoff
updated 5.6 years ago by ★ 1.3k • written 5.6 years ago by ▴ 240
14
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2
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23k
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Answer: A: What is the best way to rank genes for GSEA?
5.6 years ago by Pietro ▴ 240
0
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7
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2.2k
views
Experimental design RNAseq differential expression
limma edger RNA-Seq batch differential expression
updated 5.7 years ago by 20 • written 5.7 years ago by ▴ 240
0
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1
reply
2.2k
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Comment: C: Experimental design RNAseq differential expression
5.7 years ago by Pietro ▴ 240
0
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1
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2.2k
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Comment: C: Experimental design RNAseq differential expression
5.7 years ago by Pietro ▴ 240
0
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1
reply
2.2k
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Comment: C: Experimental design RNAseq differential expression
5.7 years ago by Pietro ▴ 240
0
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1
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1.8k
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Comment: C: GSVA Analysis Ouput Array gives lesser gene sets than original gene set array
5.7 years ago by Pietro ▴ 240
0
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0
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3.0k
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Answer: A: Intuitive explanation of GSVA analysis
5.7 years ago by Pietro ▴ 240
1
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0
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39k
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Answer: A: how to interpret NES(normalized enrichment score)?
5.9 years ago by Pietro ▴ 240
0
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1
reply
1.7k
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Comment: C: Tumor subtype classification when genes of gene set are missing from samples - G
5.9 years ago by Pietro ▴ 240
0
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3
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1.7k
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Tumor subtype classification when genes of gene set are missing from samples - GSVA approach
RNA-Seq GSVA TCGA geneset subtypes
updated 5.9 years ago by 88k • written 5.9 years ago by ▴ 240
1
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0
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3.0k
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Answer: A: Does anyone have the software "Xenome" a tool for classifying reads from xenogra
6.8 years ago by Pietro ▴ 240
0
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0
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1.8k
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Comment: C: Why does shoremap calculate allele frequency this way?
7.0 years ago by Pietro ▴ 240
5
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9
replies
2.7k
views
How to check if a gene is comprised in a certain interval? with R
gene R genome sequence
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 240
0
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2
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2.7k
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Comment: C: How to check if a gene is comprised in a certain interval? with R
9.0 years ago by Pietro ▴ 240
0
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0
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2.7k
views
Comment: A: How to check if a gene is comprised in a certain interval? with R
9.0 years ago by Pietro ▴ 240
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