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Comment: Comment: How to collapse de novo contigs into a single sequence?
3.0 years ago by marongiu.luigi ▴ 730
0
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1
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2.2k
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Comment: Comment: How to collapse de novo contigs into a single sequence?
3.0 years ago by marongiu.luigi ▴ 730
3
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6
replies
2.2k
views
How to collapse de novo contigs into a single sequence?
genome de contigs assembly spades bruijn
3.0 years ago by marongiu.luigi ▴ 730
0
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1
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1.6k
views
Comment: Comment: What is the procedure for the assembly of bacteriophage genomes?
3.0 years ago by marongiu.luigi ▴ 730
0
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1
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1.6k
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Comment: Comment: What is the procedure for the assembly of bacteriophage genomes?
3.0 years ago by marongiu.luigi ▴ 730
3
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6
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1.6k
views
What is the procedure for the assembly of bacteriophage genomes?
genome methods phage assembly WGS
updated 3.0 years ago by 8.7k • written 3.0 years ago by ▴ 730
2
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2
replies
1.1k
views
Where to store large files?
storage
updated 3.2 years ago by 7.6k • written 3.2 years ago by ▴ 730
2
votes
5
replies
2.4k
views
switch off warning in blast command line
efetch ensembl warnings
updated 3.6 years ago by ★ 28k • written 3.6 years ago by ▴ 730
0
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1
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1.2k
views
Comment: Comment: What is the resolution of microbial sequence assembly
3.6 years ago by marongiu.luigi ▴ 730
2
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4
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1.2k
views
What is the resolution of microbial sequence assembly
microbiome SPAdes assembly species
updated 3.6 years ago by ▴ 130 • written 3.6 years ago by ▴ 730
0
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1
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2.4k
views
Comment: Comment: switch off warning in blast command line
3.6 years ago by marongiu.luigi ▴ 730
0
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1
reply
830
views
Export ensembl efetch in comma-delimited format
format efetch ensembl
updated 3.6 years ago by 148k • written 3.6 years ago by ▴ 730
0
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1
reply
928
views
How to solve Warning: [blastx] Taxonomy name
alignment blastx warning blast
updated 3.7 years ago by 148k • written 3.7 years ago by ▴ 730
0
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0
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2.0k
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Comment: Comment: How to calculate bam coverage apart from Qualimap?
3.7 years ago by marongiu.luigi ▴ 730
0
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1
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2.0k
views
Comment: Comment: How to calculate bam coverage apart from Qualimap?
3.7 years ago by marongiu.luigi ▴ 730
0
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5
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2.0k
views
How to calculate bam coverage apart from Qualimap?
bam qualimap coverage
3.7 years ago by marongiu.luigi ▴ 730
2
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1
reply
1.6k
views
Why bamToFastq returns empty fastq files?
bamToFastq error bam fastq
updated 3.7 years ago by 86k • written 3.7 years ago by ▴ 730
0
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0
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2.9k
views
Comment: Comment: How to run SPAdes assembler with bam files?
3.7 years ago by marongiu.luigi ▴ 730
0
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1
reply
2.9k
views
Comment: Comment: How to run SPAdes assembler with bam files?
3.7 years ago by marongiu.luigi ▴ 730
0
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1
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2.9k
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Comment: Comment: How to run SPAdes assembler with bam files?
3.7 years ago by marongiu.luigi ▴ 730
1
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5
replies
2.9k
views
How to run SPAdes assembler with bam files?
spades assembler bam
3.7 years ago by marongiu.luigi ▴ 730
0
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0
replies
1.3k
views
Comment: Comment: References saying that BWA is not quite specific
3.7 years ago by marongiu.luigi ▴ 730
2
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3
replies
1.3k
views
References saying that BWA is not quite specific
bwamem aligner
3.7 years ago by marongiu.luigi ▴ 730
1
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1
reply
708
views
Reasons for drops in alignment
alignment quality
updated 3.7 years ago by ★ 2.9k • written 3.7 years ago by ▴ 730
0
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0
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1.7k
views
Answer: C: Error in extracting SRA file: symbol lookup error
3.9 years ago by marongiu.luigi ▴ 730
0
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1
reply
1.7k
views
Error in extracting SRA file: symbol lookup error
software error next-gen sequence
3.9 years ago by marongiu.luigi ▴ 730
0
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0
replies
675
views
How to calculate the occurrence of a stretch of nucleotides in a genome?
genome
3.9 years ago by marongiu.luigi ▴ 730
0
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1
reply
2.0k
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Comment: C: makeblastdb check for correct formatting
4.0 years ago by marongiu.luigi ▴ 730
0
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1
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2.0k
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Comment: C: makeblastdb check for correct formatting
4.0 years ago by marongiu.luigi ▴ 730
2
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7
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2.0k
views
makeblastdb check for correct formatting
software error blastdb sanity check
updated 4.0 years ago by 148k • written 4.0 years ago by ▴ 730
1
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0
replies
1.1k
views
Comment: C: How to run Transeq?
4.2 years ago by marongiu.luigi ▴ 730
1
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2
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1.1k
views
How to run Transeq?
software error use sequencing
4.2 years ago by marongiu.luigi ▴ 730
0
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1
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691
views
How to be sure that the microbiome I obtained is sound?
alignment sequencing next-gen assembly error
updated 3.6 years ago by ▴ 160 • written 4.3 years ago by ▴ 730
0
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0
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1.1k
views
Answer: A: how to download all reference files with ensembl and taxon ID?
4.3 years ago by marongiu.luigi ▴ 730
0
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1
reply
1.1k
views
how to download all reference files with ensembl and taxon ID?
sequence ensembl efetch esearch
4.3 years ago by marongiu.luigi ▴ 730
1
vote
6
replies
1.4k
views
Can I get a hit by WGS but not by PCR?
sequencing next-gen confirmation PCR
updated 4.4 years ago by 20 • written 4.5 years ago by ▴ 730
6
votes
6
replies
8.9k
views
premade BWA hg38 index
genome Assembly next-gen
updated 4.5 years ago by 20 • written 7.0 years ago by ▴ 730
1
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0
replies
3.6k
views
Comment: C: What is the story behind chrEBV?
4.5 years ago by marongiu.luigi ▴ 730
5
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3
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3.6k
views
What is the story behind chrEBV?
Assembly next-gen genome
4.5 years ago by marongiu.luigi ▴ 730
0
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1
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1.4k
views
Comment: C: Can I get a hit by WGS but not by PCR?
4.5 years ago by marongiu.luigi ▴ 730
0
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2
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1.4k
views
Comment: C: Can I get a hit by WGS but not by PCR?
4.5 years ago by marongiu.luigi ▴ 730
0
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1
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1.0k
views
Comment: C: How to test transposition in BAM files?
4.6 years ago by marongiu.luigi ▴ 730
3
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4
replies
1.0k
views
How to test transposition in BAM files?
Assembly sequencing trasnposition
4.6 years ago by marongiu.luigi ▴ 730
0
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1
reply
4.8k
views
Comment: C: sambamba-sort: Error reading BGZF with BAM file
4.6 years ago by marongiu.luigi ▴ 730
3
votes
4
replies
4.8k
views
sambamba-sort: Error reading BGZF with BAM file
software error sort sambamba
updated 4.6 years ago by 86k • written 4.6 years ago by ▴ 730
8
votes
2
replies
1000
views
What species are indicators of environmental contamination in metagenomic studies?
WGS alignment assembly RNA-Seq contamination
updated 4.7 years ago by 7.0k • written 4.7 years ago by ▴ 730
0
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0
replies
867
views
Comment: C: Is there a model for detection of few reads for low abundance targets?
4.7 years ago by marongiu.luigi ▴ 730
0
votes
1
reply
867
views
Comment: C: Is there a model for detection of few reads for low abundance targets?
4.7 years ago by marongiu.luigi ▴ 730
2
votes
4
replies
867
views
Is there a model for detection of few reads for low abundance targets?
WGS alignment next-gen sequencing
4.7 years ago by marongiu.luigi ▴ 730
0
votes
2
replies
2.2k
views
use samtools stats to plot quality of alignment
alignment quality control visualization
updated 4.7 years ago by 86k • written 4.7 years ago by ▴ 730
529 results • Page 2 of 11
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