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Comment: C: de novo transcriptome assembly work flow, paired end reads
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
0
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0
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4.6k
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Comment: C: de novo transcriptome assembly work flow, paired end reads
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
0
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1
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4.6k
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Comment: C: de novo transcriptome assembly work flow, paired end reads
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
0
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1
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4.6k
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Comment: C: de novo transcriptome assembly work flow, paired end reads
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
0
votes
1
reply
4.6k
views
Comment: C: de novo transcriptome assembly work flow, paired end reads
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
5
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6
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5.3k
views
Genome guided assembly with Trinity using STAR genome index
RNA-Seq star trinity
updated 4.9 years ago by • 0 • written 7.4 years ago by ▴ 110
0
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0
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3.7k
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Comment: C: Generating Read Length?
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
0
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1
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3.7k
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Comment: C: Generating Read Length?
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
0
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1
reply
4.8k
views
Comment: C: align_and_estimate_abundance.pl ERROR/ QUESTION
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
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1
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4.8k
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Comment: C: align_and_estimate_abundance.pl ERROR/ QUESTION
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
0
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0
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3.0k
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Comment: C: ERROR Running Detonate: RSEM EVAL on RNA SEQ assembly
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
0
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1
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3.0k
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Comment: C: ERROR Running Detonate: RSEM EVAL on RNA SEQ assembly
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 110
1
vote
2
replies
2.4k
views
Error with combining samples into matrix using abundance_estimates_to_matrix.pl
edger RNA-Seq rna-seq matrix DE
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 110
7
votes
12
replies
3.2k
views
weird STAR output, bash scripting problem
RNA-Seq STAR bash
updated 7.2 years ago by 35k • written 7.2 years ago by ▴ 110
0
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0
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3.2k
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Comment: C: weird STAR output, bash scripting problem
7.2 years ago by nikelle.petrillo ▴ 110
0
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2
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3.2k
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Comment: C: weird STAR output, bash scripting problem
7.2 years ago by nikelle.petrillo ▴ 110
0
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1
reply
3.2k
views
Comment: C: weird STAR output, bash scripting problem
7.2 years ago by nikelle.petrillo ▴ 110
0
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0
replies
5.5k
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Comment: C: automated script to trim paired end RNA seq reads using Trimmomatic
7.3 years ago by nikelle.petrillo ▴ 110
0
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1
reply
5.5k
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Comment: C: automated script to trim paired end RNA seq reads using Trimmomatic
7.3 years ago by nikelle.petrillo ▴ 110
2
votes
8
replies
5.5k
views
automated script to trim paired end RNA seq reads using Trimmomatic
RNA-Seq trimming trimmomatic loops
updated 7.3 years ago by 35k • written 7.3 years ago by ▴ 110
0
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1
reply
5.5k
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Comment: C: automated script to trim paired end RNA seq reads using Trimmomatic
7.3 years ago by nikelle.petrillo ▴ 110
1
vote
2
replies
8.2k
views
Downloading Fastq files from ENA using FTP
fastq RNA-Seq ena
updated 20 months ago by 44k • written 7.3 years ago by ▴ 110
0
votes
3
replies
2.0k
views
How to see what percentage of reads remain after quality filter to a certain phred score
phred fastqc RNA-Seq quality control
7.3 years ago by nikelle.petrillo ▴ 110
0
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1
reply
5.3k
views
Comment: C: Genome guided assembly with Trinity using STAR genome index
7.4 years ago by nikelle.petrillo ▴ 110
1
vote
2
replies
4.4k
views
RSEM error abundance_estimates_to_matrix.pl
RNA-Seq RSEM abundance estimate
updated 7.4 years ago by ▴ 20 • written 8.6 years ago by ▴ 110
1
vote
3
replies
1.8k
views
Number of contigs does not match number in count matrix --- de novo assembly
trinity rna-seq Assembly
updated 15 months ago by 44k • written 8.4 years ago by ▴ 110
0
votes
1
reply
2.0k
views
Count matrix error. abundance_estimates_to_matrix.pl Error
trinity RNA-Seq count matrix DE
updated 8.4 years ago by 27k • written 8.5 years ago by ▴ 110
1
vote
1
reply
2.8k
views
trinity assembly error, run failed
trinity rna-seq
updated 15 months ago by 44k • written 8.5 years ago by ▴ 110
2
votes
3
replies
5.0k
views
How to determine number of contigs used in Trinity assembly?
trinity DE assembly rna-seq
updated 15 months ago by 44k • written 8.4 years ago by ▴ 110
0
votes
2
replies
6.2k
views
Comment: C: using IGV to visualize RNA seq alignment to transcriptome
8.4 years ago by nikelle.petrillo ▴ 110
0
votes
4
replies
6.2k
views
using IGV to visualize RNA seq alignment to transcriptome
rna-seq igv alignment
updated 15 months ago by 44k • written 8.4 years ago by ▴ 110
0
votes
1
reply
2.1k
views
Comment: C: differential expression analysis, trinity error
8.4 years ago by nikelle.petrillo ▴ 110
1
vote
5
replies
2.1k
views
differential expression analysis, trinity error
DE RNA RNA-Seq trinity
updated 8.4 years ago by 147k • written 8.4 years ago by ▴ 110
0
votes
1
reply
2.1k
views
Comment: C: differential expression analysis, trinity error
8.4 years ago by nikelle.petrillo ▴ 110
0
votes
0
replies
1.9k
views
Comment: C: do i need to run Trinity assembly ALL over?
8.4 years ago by nikelle.petrillo ▴ 110
1
vote
2
replies
1.9k
views
do i need to run Trinity assembly ALL over?
trinity assembly rna-seq
updated 15 months ago by 44k • written 8.4 years ago by ▴ 110
0
votes
1
reply
1.7k
views
Comment: C: EdgeR Error, 0 gene counts for 1 sample
8.5 years ago by nikelle.petrillo ▴ 110
0
votes
1
reply
1.7k
views
Comment: C: EdgeR Error, 0 gene counts for 1 sample
8.5 years ago by nikelle.petrillo ▴ 110
0
votes
5
replies
1.7k
views
EdgeR Error, 0 gene counts for 1 sample
RNA-Seq differential expression DE edger
8.5 years ago by nikelle.petrillo ▴ 110
1
vote
1
reply
1.9k
views
Aligning Reads to Transcriptome Question
rna RNA-Seq aligning trinity
updated 8.5 years ago by 20 • written 8.6 years ago by ▴ 110
1
vote
2
replies
7.4k
views
Comment: C: Understanding Trimmomatic Sliding Window Approach
8.5 years ago by nikelle.petrillo ▴ 110
16
votes
8
replies
7.4k
views
Understanding Trimmomatic Sliding Window Approach
RNA-Seq trimmomatic quality control qc
updated 8.5 years ago by ▴ 180 • written 8.5 years ago by ▴ 110
1
vote
1
reply
7.4k
views
Comment: C: Understanding Trimmomatic Sliding Window Approach
8.5 years ago by nikelle.petrillo ▴ 110
0
votes
1
reply
2.0k
views
Trinity Assembly Timing Question
Trinity RNA-Seq assembly
8.5 years ago by nikelle.petrillo ▴ 110
0
votes
0
replies
9.2k
views
Comment: C: Determining read count
8.6 years ago by nikelle.petrillo ▴ 110
0
votes
1
reply
9.2k
views
Comment: C: Determining read count
8.6 years ago by nikelle.petrillo ▴ 110
0
votes
1
reply
9.2k
views
Comment: C: Determining read count
updated 8.6 years ago by 147k • written 8.6 years ago by ▴ 110
0
votes
0
replies
9.2k
views
Comment: C: Determining read count
8.6 years ago by nikelle.petrillo ▴ 110
7
votes
8
replies
9.2k
views
Determining read count
trimmomatic rna-seq trinity
updated 15 months ago by 44k • written 8.6 years ago by ▴ 110
0
votes
1
reply
3.7k
views
Comment: C: de novo RNA seq, combining left and right reads to create assembly
8.6 years ago by nikelle.petrillo ▴ 110
81 results • Page 1 of 2
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