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How to do variant calling on .sam and .bam files using 'bio-samtools'?
wgs sequencing sequence software-error
updated 2.7 years ago by ▴ 250 • written 9.4 years ago by ▴ 20
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1.9k
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Answer: A: UCSC browser gives two sets of exons for a Refseq ID (f and r) - SNP interpretat
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 20
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Comment: C: How to do BBmap batch processing correctly?
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 20
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5.5k
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Comment: C: How to do BBmap batch processing correctly?
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 20
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1
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3.1k
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Comment: C: Is it possible to include BBMap in Bcbio-nextgen pipeline?
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 20
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Comment: C: Sambamba: High Performance Alternative For Samtools And Picard For Indexing, Sor
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 20
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3
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2.6k
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How to install Picard/Pilons software and do variant call on a set of .sam files?
software error sequencing wgs
updated 8.9 years ago by ▴ 10 • written 9.4 years ago by ▴ 20
2
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1
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2.0k
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How to use Ruby BioSamtools for SNP finding on .bam and .sam files?
ruby bioruby samtools
updated 2.7 years ago by 45k • written 9.4 years ago by ▴ 20
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2
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4.8k
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What R packages and functions can perform variant calling on .sam and .bam files?
sequencing sequence wgs R
updated 2.7 years ago by 45k • written 9.4 years ago by ▴ 20
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2
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2.2k
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How to pass shell script's arguments when calling BBMap from Python?
python shell sequencing bash
updated 2.7 years ago by 45k • written 9.4 years ago by ▴ 20
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0
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2.2k
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Comment: C: How to pass shell script`s arguments when calling BBMap from Python?
9.4 years ago by elvissober ▴ 20
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0
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2.4k
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Comment: C: How to do variant calling on .sam and .bam files using 'bio-samtools'?
9.4 years ago by elvissober ▴ 20
2
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1
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1.8k
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What software produces VCF files from the .sam input?
sequencing sequence wgs soft
updated 9.4 years ago by 166k • written 9.4 years ago by ▴ 20
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3.1k
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Comment: C: Is it possible to include BBMap in Bcbio-nextgen pipeline?
9.4 years ago by elvissober ▴ 20
2
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1
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1.6k
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How to run VCFTools and other variant callers on a set of .sam output of BBMap and other aligners?
soft wgs sequencing vcf sam
9.4 years ago by elvissober ▴ 20
6
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7
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3.1k
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Is it possible to include BBMap in Bcbio-nextgen pipeline?
seq wg soft sequencing
updated 9.4 years ago by 9.7k • written 9.4 years ago by ▴ 20
3
votes
6
replies
5.5k
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How to do BBmap batch processing correctly?
python sequencing wgs sequence software-error
updated 2.9 years ago by 45k • written 9.4 years ago by ▴ 20
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