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408
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Answer: Answer: Output checks during Snakemake pipeline
11 weeks ago by Eric Lim ★ 2.2k
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236
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Comment: Comment: usually retained introns
3 months ago by Eric Lim ★ 2.2k
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0
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507
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Comment: Comment: Snakemake paralellize
9 months ago by Eric Lim ★ 2.2k
1
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1
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824
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Comment: Comment: Suggestions for a simpler solution for collecting snakemake rule output in a tex
10 months ago by Eric Lim ★ 2.2k
1
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1
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1.8k
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Comment: Comment: Snakemake issue with wrappers
12 months ago by Eric Lim ★ 2.2k
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0
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1.3k
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Comment: Comment: Wildcards in Snakemake
13 months ago by Eric Lim ★ 2.2k
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1
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1.3k
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Comment: Comment: Wildcards in Snakemake
13 months ago by Eric Lim ★ 2.2k
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0
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2.6k
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Answer: Answer: Don't choose Novogene for your sequencing projects
16 months ago by Eric Lim ★ 2.2k
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0
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974
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Comment: Comment: Identify Alternative Splicing Event using exon and junction count table
16 months ago by Eric Lim ★ 2.2k
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1
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953
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Comment: Comment: take user options before calling snakemake
19 months ago by Eric Lim ★ 2.2k
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1
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1.1k
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Comment: Comment: Do we need replicates for PSI calculation in SUPPA2?
20 months ago by Eric Lim ★ 2.2k
2
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1
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2.0k
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Comment: Comment: how to speed up snakemake workflow
23 months ago by Eric Lim ★ 2.2k
1
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1
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1.6k
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Answer: Answer: how to specify a specific conda environment in a specific rule with snakemake?
2.0 years ago by Eric Lim ★ 2.2k
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0
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897
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Comment: Comment: Rule all has wrong order
2.1 years ago by Eric Lim ★ 2.2k
1
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0
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3.3k
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Comment: Comment: Prepare for a job interview in bioinformatics
2.3 years ago by Eric Lim ★ 2.2k
1
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1
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3.3k
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Comment: Comment: Big difference in estimated duplicate reads between forward and reverse of paire
2.4 years ago by Eric Lim ★ 2.2k
0
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0
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1.1k
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Job: Bioinformatics Lead at Stoke Therapeutics, Inc (MA)
rna-splicing
updated 2.4 years ago by 44k • written 2.7 years ago by ★ 2.2k
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1
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1.9k
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Comment: Comment: Understanding percent spliced in
2.7 years ago by Eric Lim ★ 2.2k
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1
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1.5k
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Comment: Comment: Snakemake error in gatk pipeline
2.8 years ago by Eric Lim ★ 2.2k
1
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0
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4.8k
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Comment: Comment: Read bam/cram file with IGV from aws s3
2.8 years ago by Eric Lim ★ 2.2k
3
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1
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5.0k
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Answer: Answer: Is it possible to pass command line arguments to python script in snakemake?
2.9 years ago by Eric Lim ★ 2.2k
1
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0
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693
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Comment: Comment: What happens to the outputs when you update the rule's conda environment
2.9 years ago by Eric Lim ★ 2.2k
3
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1
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1.6k
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Comment: Comment: Snakemake issue
2.9 years ago by Eric Lim ★ 2.2k
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0
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2.5k
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Answer: Answer: Snakemake command line arguments
2.9 years ago by Eric Lim ★ 2.2k
1
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1
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2.6k
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Comment: Comment: snakemake how to get or create wildcards from newly generated files
2.9 years ago by Eric Lim ★ 2.2k
1
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0
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2.4k
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Comment: Comment: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
2.9 years ago by Eric Lim ★ 2.2k
1
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1
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2.4k
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Comment: Comment: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
2.9 years ago by Eric Lim ★ 2.2k
2
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1
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2.4k
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Answer: Answer: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
2.9 years ago by Eric Lim ★ 2.2k
0
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2
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3.3k
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Comment: Comment: Snakemake Megahit error
3.0 years ago by Eric Lim ★ 2.2k
0
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1
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3.3k
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Comment: Comment: Snakemake Megahit error
3.0 years ago by Eric Lim ★ 2.2k
1
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0
replies
2.3k
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Comment: Comment: Missing Input files Error with snakemake pipeline
3.0 years ago by Eric Lim ★ 2.2k
1
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1
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2.3k
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Comment: Comment: Missing Input files Error with snakemake pipeline
3.0 years ago by Eric Lim ★ 2.2k
2
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1
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2.3k
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Answer: Answer: Missing Input files Error with snakemake pipeline
3.0 years ago by Eric Lim ★ 2.2k
1
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0
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3.3k
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Comment: Comment: Snakemake Megahit error
3.0 years ago by Eric Lim ★ 2.2k
0
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0
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744
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Comment: Comment: snakemake input wildcards
3.1 years ago by Eric Lim ★ 2.2k
2
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1
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4.3k
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Comment: Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
3.3 years ago by Eric Lim ★ 2.2k
0
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0
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1.0k
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Job: Bioinformatics internships and co-ops (2021) at Stoke Therapeutics. Remote locations in the US.
internship co-op
updated 20 months ago by 44k • written 3.7 years ago by ★ 2.2k
0
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0
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2.5k
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Comment: C: Bioinformatics Server on AWS
4.8 years ago by Eric Lim ★ 2.2k
4
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1
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4.3k
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Answer: A: Snakemake: Force execution of rules in a specific order - ignoring wildcards
4.8 years ago by Eric Lim ★ 2.2k
1
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1
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2.0k
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Comment: C: GSK Data Strategy & Design Expert
4.8 years ago by Eric Lim ★ 2.2k
8
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9
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3.3k
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6 follow
Big difference in estimated duplicate reads between forward and reverse of paired-end RNA-seq
RNA-Seq duplication fastqc
updated 2.4 years ago by ▴ 920 • written 5.0 years ago by ★ 2.2k
0
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0
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1.1k
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Comment: C: Generate list of numbers corresponding to fq reads based on 6-character barcode
5.0 years ago by Eric Lim ★ 2.2k
1
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0
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2.8k
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Comment: C: how to index different genomes with snakemake with different parameters?
5.0 years ago by Eric Lim ★ 2.2k
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0
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1.8k
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Comment: C: LiftOver from b37
5.0 years ago by Eric Lim ★ 2.2k
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0
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1.3k
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Comment: C: Understanding the annotation tag
5.0 years ago by Eric Lim ★ 2.2k
2
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0
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1.1k
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Answer: C: Identifying codons from rna-seq data (bed/bam file)
5.0 years ago by Eric Lim ★ 2.2k
1
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1
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3.3k
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Comment: C: Big difference in estimated duplicate reads between forward and reverse of paire
5.0 years ago by Eric Lim ★ 2.2k
0
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1
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3.3k
views
Comment: C: Big difference in estimated duplicate reads between forward and reverse of paire
5.0 years ago by Eric Lim ★ 2.2k
0
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0
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2.0k
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Job: Bioinformatics Analyst - Stoke Therapeutics, Inc, Bedford MA, USA
aws web-application ngs
updated 17 months ago by 44k • written 5.1 years ago by ★ 2.2k
0
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0
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9.2k
views
Comment: C: snakemake: pipeline failed with MissingOutputException
5.1 years ago by Eric Lim ★ 2.2k
233 results • Page 1 of 5
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