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Comment: Comment: Conda failing to install VEP
3.0 years ago by michael.flower.14 ▴ 200
3
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3
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2.3k
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Conda failing to install VEP
VEP conda
updated 3.0 years ago by ▴ 530 • written 3.0 years ago by ▴ 200
0
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0
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3.0k
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Comment: Comment: Failing to install VEP dependencies
3.0 years ago by michael.flower.14 ▴ 200
0
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1
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3.0k
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Comment: Comment: Failing to install VEP dependencies
3.0 years ago by michael.flower.14 ▴ 200
0
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0
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1.8k
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Comment: Comment: Padding out a GVCF file with 1000G exomes to get gatk VariantRecalibrator workin
3.0 years ago by michael.flower.14 ▴ 200
0
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1
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1.8k
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Comment: Comment: Padding out a GVCF file with 1000G exomes to get gatk VariantRecalibrator workin
3.0 years ago by michael.flower.14 ▴ 200
0
votes
4
replies
3.0k
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Failing to install VEP dependencies
yep cpanm DBI
3.0 years ago by michael.flower.14 ▴ 200
0
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1
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1.8k
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Comment: Comment: Padding out a GVCF file with 1000G exomes to get gatk VariantRecalibrator workin
3.0 years ago by michael.flower.14 ▴ 200
0
votes
6
replies
1.8k
views
Padding out a GVCF file with 1000G exomes to get gatk VariantRecalibrator working with a small sample
variantrecalibrator gatk gvcf
3.0 years ago by michael.flower.14 ▴ 200
0
votes
0
replies
697
views
gatk VariantRecalibrator positional argument error
VariantRecalibrator gatk vcf
3.0 years ago by michael.flower.14 ▴ 200
1
vote
2
replies
758
views
Using comm to make a list of files that haven't yet been processed
linux comm
updated 3.0 years ago by 164k • written 3.0 years ago by ▴ 200
0
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0
replies
1.8k
views
Comment: Comment: Removing diff syntax from its output
3.0 years ago by michael.flower.14 ▴ 200
0
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1
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1.8k
views
Comment: Comment: Removing diff syntax from its output
3.0 years ago by michael.flower.14 ▴ 200
0
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0
replies
8.5k
views
Comment: Comment: Changing the default location for conda install
3.0 years ago by michael.flower.14 ▴ 200
0
votes
0
replies
665
views
Making consensus sequence for each haplotype
bcftools consensus
3.0 years ago by michael.flower.14 ▴ 200
0
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1
reply
1.8k
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Comment: Comment: Removing diff syntax from its output
3.0 years ago by michael.flower.14 ▴ 200
0
votes
1
reply
8.5k
views
Comment: Comment: Changing the default location for conda install
3.0 years ago by michael.flower.14 ▴ 200
0
votes
1
reply
1.8k
views
Comment: Comment: Removing diff syntax from its output
3.0 years ago by michael.flower.14 ▴ 200
0
votes
1
reply
1.8k
views
Comment: Comment: Removing diff syntax from its output
3.0 years ago by michael.flower.14 ▴ 200
3
votes
9
replies
1.8k
views
Removing diff syntax from its output
diff linux
3.0 years ago by michael.flower.14 ▴ 200
4
votes
4
replies
8.5k
views
Changing the default location for conda install
conda linux install
updated 3.0 years ago by 147k • written 3.0 years ago by ▴ 200
0
votes
0
replies
629
views
Consensus sequence for phased variant calls
gatk phasing bcftools consensus
3.0 years ago by michael.flower.14 ▴ 200
0
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0
replies
2.4k
views
Comment: Comment: Using tabix to subset a region from a VCF file
3.0 years ago by michael.flower.14 ▴ 200
2
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3
replies
2.4k
views
Using tabix to subset a region from a VCF file
tabix conda vcf
3.0 years ago by michael.flower.14 ▴ 200
0
votes
0
replies
566
views
SHAPEIT phased haps file does not contain my SNPs of interest
phasing SHAPEIT conda
3.0 years ago by michael.flower.14 ▴ 200
0
votes
0
replies
982
views
Convert SHAPEIT haps file to vcf
vcf shapeit conda
updated 16 months ago by 44k • written 3.0 years ago by ▴ 200
3
votes
3
replies
1.7k
views
SHAPEIT using VCF unphased genotype input
VCF SHAPEIT
3.0 years ago by michael.flower.14 ▴ 200
3
votes
0
replies
1.7k
views
Answer: Answer: SHAPEIT using VCF unphased genotype input
3.0 years ago by michael.flower.14 ▴ 200
0
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0
replies
1.7k
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Comment: Comment: SHAPEIT using VCF unphased genotype input
3.0 years ago by michael.flower.14 ▴ 200
1
vote
0
replies
1.1k
views
Comment: Comment: Running GATK HaplotypeCaller over just one chromosome of a whole genome bam file
3.0 years ago by michael.flower.14 ▴ 200
1
vote
1
reply
1.1k
views
Running GATK HaplotypeCaller over just one chromosome of a whole genome bam file
GATK conda HaplotypeCaller
3.0 years ago by michael.flower.14 ▴ 200
0
votes
0
replies
1.9k
views
Comment: Comment: GATK HaplotypeCaller works without GVCF option, but errors with GVCF
3.0 years ago by michael.flower.14 ▴ 200
0
votes
1
reply
1.9k
views
Comment: Comment: GATK HaplotypeCaller works without GVCF option, but errors with GVCF
3.0 years ago by michael.flower.14 ▴ 200
0
votes
0
replies
1.3k
views
Comment: Comment: PGT only available for some variants in GATK .vcf
3.0 years ago by michael.flower.14 ▴ 200
0
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1
reply
1.9k
views
Comment: Comment: GATK HaplotypeCaller works without GVCF option, but errors with GVCF
3.0 years ago by michael.flower.14 ▴ 200
0
votes
1
reply
1.9k
views
Comment: Comment: GATK HaplotypeCaller works without GVCF option, but errors with GVCF
3.0 years ago by michael.flower.14 ▴ 200
0
votes
7
replies
1.9k
views
GATK HaplotypeCaller works without GVCF option, but errors with GVCF
picard GATK conda
3.0 years ago by michael.flower.14 ▴ 200
1
vote
2
replies
1.3k
views
PGT only available for some variants in GATK .vcf
GATK conda
3.0 years ago by michael.flower.14 ▴ 200
2
votes
2
replies
1.8k
views
GATK Mutect2 errors during basic variant calling
GATK conda
3.0 years ago by michael.flower.14 ▴ 200
2
votes
0
replies
1.8k
views
Answer: Answer: GATK Mutect2 errors during basic variant calling
3.0 years ago by michael.flower.14 ▴ 200
0
votes
0
replies
8.3k
views
Comment: Comment: Using GATK in conda
3.0 years ago by michael.flower.14 ▴ 200
10
votes
3
replies
8.3k
views
Using GATK in conda
gatk conda
updated 2.3 years ago by • 0 • written 3.0 years ago by ▴ 200
0
votes
2
replies
1.1k
views
Importing WGCNA edge and node files into Cytoscape
WGCNA Cytoscape
updated 3.1 years ago by ▴ 280 • written 3.1 years ago by ▴ 200
1
vote
1
reply
776
views
Syntax error when running ScaleHD
repeats expansion illumina ScaleHD amplicon
updated 2.4 years ago by ▴ 50 • written 3.3 years ago by ▴ 200
0
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1
reply
3.3k
views
Comment: Comment: Problems running gatk - gatk: command not found
3.4 years ago by michael.flower.14 ▴ 200
0
votes
3
replies
3.3k
views
Problems running gatk - gatk: command not found
vcf bam gatk
updated 3.4 years ago by ★ 1.2k • written 3.4 years ago by ▴ 200
0
votes
0
replies
2.9k
views
Comment: Comment: How to set a multiqc outpath
3.4 years ago by michael.flower.14 ▴ 200
2
votes
2
replies
2.9k
views
How to set a multiqc outpath
fastqc multiqc
3.4 years ago by michael.flower.14 ▴ 200
0
votes
1
reply
4.9k
views
Comment: Comment: bcftools command not found
3.4 years ago by michael.flower.14 ▴ 200
0
votes
4
replies
4.9k
views
bcftools command not found
samtools bcftools vcf bam
updated 3.4 years ago by 85k • written 3.4 years ago by ▴ 200
120 results • Page 2 of 3
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