Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
547
views
Comment: Comment: tteximeta problem: couldn't find matching transcriptome, returning non-ranged Su
26 days ago by tarek.mohamed ▴ 370
0
votes
3
replies
547
views
tteximeta problem: couldn't find matching transcriptome, returning non-ranged SummarizedExperiment
teximeta salmon
updated 26 days ago by ▴ 170 • written 27 days ago by ▴ 370
0
votes
1
reply
2.9k
views
Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
10 months ago by tarek.mohamed ▴ 370
1
vote
2
replies
1.1k
views
What is the best aligner for stranded RNASeq
aligner stranded RNAseq
updated 2.1 years ago by 13k • written 2.1 years ago by ▴ 370
0
votes
1
reply
913
views
find mouse homologs to human long non coding rnas
human lncnra homologs mouse
updated 2.4 years ago by ▴ 260 • written 2.5 years ago by ▴ 370
0
votes
1
reply
5.2k
views
Comment: C: impute2 output files to vcf
5.5 years ago by tarek.mohamed ▴ 370
1
vote
0
replies
5.2k
views
Comment: C: impute2 output files to vcf
5.5 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
5.2k
views
Comment: C: impute2 output files to vcf
5.5 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
5.2k
views
Comment: C: impute2 output files to vcf
5.5 years ago by tarek.mohamed ▴ 370
4
votes
9
replies
5.2k
views
impute2 output files to vcf
vcf impute2
updated 2.2 years ago by 45k • written 5.5 years ago by ▴ 370
2
votes
5
replies
2.5k
views
Minion reads error rate for indels and snps
minion error rate
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 370
0
votes
1
reply
2.5k
views
Comment: C: Minion reads error rate for indels and snps
6.1 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
4.9k
views
using tximport to prepare salmon quantification files for DEG analysis
RNA-Seq tximport
updated 6.2 years ago by 20 • written 7.1 years ago by ▴ 370
0
votes
1
reply
2.9k
views
Rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
Rsubread BWA NGS
updated 6.2 years ago by ★ 8.1k • written 8.8 years ago by ▴ 370
2
votes
2
replies
3.4k
views
lgen to ped using plink
plink lgen mismatch
updated 6.3 years ago by 12k • written 7.8 years ago by ▴ 370
3
votes
3
replies
6.9k
views
Nanopore SNP and indels calling tool
snp nanopore indel-calling
updated 2.0 years ago by 45k • written 6.9 years ago by ▴ 370
4
votes
1
reply
3.2k
views
structural variant vcf file comparison
vcf SV
updated 6.6 years ago by 48k • written 6.6 years ago by ▴ 370
0
votes
0
replies
1.4k
views
Comment: C: Using one bam file with huge coverage, How to generate several bam files with di
6.8 years ago by tarek.mohamed ▴ 370
1
vote
2
replies
1.4k
views
Using one bam file with huge coverage, How to generate several bam files with different coverage
bam filter SNPs caller
updated 6.8 years ago by 48k • written 6.8 years ago by ▴ 370
0
votes
1
reply
11k
views
Comment: C: bcftools mpileup output format
6.8 years ago by tarek.mohamed ▴ 370
3
votes
3
replies
11k
views
bcftools mpileup output format
bcftools mpileup
6.8 years ago by tarek.mohamed ▴ 370
0
votes
3
replies
2.5k
views
Percent identity plot
precent identitiy alignment plot
updated 6.9 years ago by 35k • written 6.9 years ago by ▴ 370
0
votes
0
replies
3.6k
views
Comment: C: Long DNA reads aligned
6.9 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
3.6k
views
Comment: C: Long DNA reads aligned
6.9 years ago by tarek.mohamed ▴ 370
4
votes
6
replies
3.6k
views
Long DNA reads aligned
nanopore
updated 6.9 years ago by 48k • written 6.9 years ago by ▴ 370
0
votes
4
replies
6.1k
views
How to extract raw genotype calls from idat or gtc illumina files
gtc files idat files raw genotype calls
updated 6.9 years ago by ▴ 630 • written 7.8 years ago by ▴ 370
0
votes
0
replies
1.6k
views
Comment: C: amino acid alteration position for SNPs using biomart
7.0 years ago by tarek.mohamed ▴ 370
3
votes
2
replies
1.6k
views
amino acid alteration position for SNPs using biomart
biomart snps locations aminoacids
updated 7.0 years ago by 8.4k • written 7.0 years ago by ▴ 370
0
votes
9
replies
3.2k
views
How to increase the speed of subread for DNA whole genome sequence
subread speed DNA sequence
updated 7.1 years ago by ▴ 20 • written 8.8 years ago by ▴ 370
0
votes
1
reply
2.2k
views
Plotting linkage equilibrium results
linkage disequilibrium plink plotting LD heatmap
updated 7.5 years ago by ▴ 990 • written 7.5 years ago by ▴ 370
0
votes
0
replies
9.2k
views
Comment: C: linkage disequilibrium analysis
7.5 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
9.2k
views
Comment: C: linkage disequilibrium analysis
7.6 years ago by tarek.mohamed ▴ 370
7
votes
8
replies
9.2k
views
linkage disequilibrium analysis
LD SNPs different chromosomes
updated 3.9 years ago by 89k • written 7.6 years ago by ▴ 370
0
votes
0
replies
1.4k
views
Answer: A: SNPs and Gene Expression
7.6 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
2.7k
views
Comment: C: counting the reads that mapped to a part of transcriptome
7.7 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
2.7k
views
Answer: A: counting the reads that mapped to a part of transcriptome
7.7 years ago by tarek.mohamed ▴ 370
3
votes
0
replies
39k
views
Comment: Comment: How is the design in DESeq2 work?
updated 4 months ago by 45k • written 7.7 years ago by ▴ 370
6
votes
2
replies
39k
views
Comment: C: How is the design in DESeq2 work?
7.7 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
2.6k
views
Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
7.7 years ago by tarek.mohamed ▴ 370
1
vote
3
replies
3.5k
views
compare genotypes in two vcf files
vcf genotype
updated 2.2 years ago by 45k • written 7.8 years ago by ▴ 370
0
votes
0
replies
4.4k
views
Comment: C: PLINK2 recode ped flag issue
7.7 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
4.4k
views
Answer: A: PLINK2 recode ped flag issue
7.7 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
3.1k
views
Answer: A: Using GAGE to Analyze Pathway Enrichment Directly from Fold Change Data
7.7 years ago by tarek.mohamed ▴ 370
1
vote
1
reply
2.0k
views
Answer: A: Converting numeric to alphanumeric allele codes
7.7 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
1.5k
views
Answer: A: Counting read ends in RNA-Seq
7.7 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
2.5k
views
Comment: C: NGS alignment image drawing
7.7 years ago by tarek.mohamed ▴ 370
8
votes
1
reply
8.6k
views
Answer: C: efetch error LWP::Protocol::https not installed
7.7 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
4.9k
views
Comment: C: Download snps within 1Mb from gene
7.7 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
2.3k
views
Answer: A: List of accession numbers for nucleotide sequences to protein sequences using R
7.7 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
2.0k
views
Comment: C: Finding specific subsets of genes related with known transcription factors
7.7 years ago by tarek.mohamed ▴ 370
102 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6