Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.9k
views
Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
3 months ago by tarek.mohamed ▴ 370
1
vote
2
replies
774
views
What is the best aligner for stranded RNASeq
aligner stranded RNAseq
updated 18 months ago by 13k • written 18 months ago by ▴ 370
0
votes
1
reply
648
views
find mouse homologs to human long non coding rnas
human lncnra homologs mouse
updated 22 months ago by ▴ 260 • written 23 months ago by ▴ 370
0
votes
1
reply
4.6k
views
Comment: C: impute2 output files to vcf
5.0 years ago by tarek.mohamed ▴ 370
1
vote
0
replies
4.6k
views
Comment: C: impute2 output files to vcf
5.0 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
4.6k
views
Comment: C: impute2 output files to vcf
5.0 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
4.6k
views
Comment: C: impute2 output files to vcf
5.0 years ago by tarek.mohamed ▴ 370
4
votes
9
replies
4.6k
views
impute2 output files to vcf
vcf impute2
updated 20 months ago by 44k • written 5.0 years ago by ▴ 370
2
votes
5
replies
2.2k
views
Minion reads error rate for indels and snps
minion error rate
updated 5.5 years ago by 20 • written 5.5 years ago by ▴ 370
0
votes
1
reply
2.2k
views
Comment: C: Minion reads error rate for indels and snps
5.5 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
4.6k
views
using tximport to prepare salmon quantification files for DEG analysis
RNA-Seq tximport
updated 5.6 years ago by 20 • written 6.6 years ago by ▴ 370
0
votes
1
reply
2.6k
views
Rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
Rsubread BWA NGS
updated 5.7 years ago by ★ 7.7k • written 8.2 years ago by ▴ 370
2
votes
2
replies
3.2k
views
lgen to ped using plink
plink lgen mismatch
updated 5.8 years ago by 12k • written 7.2 years ago by ▴ 370
3
votes
3
replies
6.4k
views
Nanopore SNP and indels calling tool
snp nanopore indel-calling
updated 17 months ago by 44k • written 6.4 years ago by ▴ 370
4
votes
1
reply
3.0k
views
structural variant vcf file comparison
vcf SV
updated 6.0 years ago by 47k • written 6.0 years ago by ▴ 370
0
votes
0
replies
1.2k
views
Comment: C: Using one bam file with huge coverage, How to generate several bam files with di
6.2 years ago by tarek.mohamed ▴ 370
1
vote
2
replies
1.2k
views
Using one bam file with huge coverage, How to generate several bam files with different coverage
bam filter SNPs caller
updated 6.2 years ago by 47k • written 6.2 years ago by ▴ 370
0
votes
1
reply
11k
views
Comment: C: bcftools mpileup output format
6.3 years ago by tarek.mohamed ▴ 370
3
votes
3
replies
11k
views
bcftools mpileup output format
bcftools mpileup
6.3 years ago by tarek.mohamed ▴ 370
0
votes
3
replies
2.2k
views
Percent identity plot
precent identitiy alignment plot
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 370
0
votes
0
replies
3.2k
views
Comment: C: Long DNA reads aligned
6.4 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
3.2k
views
Comment: C: Long DNA reads aligned
6.4 years ago by tarek.mohamed ▴ 370
4
votes
6
replies
3.2k
views
Long DNA reads aligned
nanopore
updated 6.4 years ago by 47k • written 6.4 years ago by ▴ 370
0
votes
4
replies
5.7k
views
How to extract raw genotype calls from idat or gtc illumina files
gtc files idat files raw genotype calls
updated 6.4 years ago by ▴ 570 • written 7.3 years ago by ▴ 370
0
votes
0
replies
1.4k
views
Comment: C: amino acid alteration position for SNPs using biomart
6.4 years ago by tarek.mohamed ▴ 370
3
votes
2
replies
1.4k
views
amino acid alteration position for SNPs using biomart
biomart snps locations aminoacids
updated 6.4 years ago by 8.3k • written 6.4 years ago by ▴ 370
0
votes
9
replies
2.8k
views
How to increase the speed of subread for DNA whole genome sequence
subread speed DNA sequence
updated 6.5 years ago by ▴ 20 • written 8.2 years ago by ▴ 370
0
votes
1
reply
2.0k
views
Plotting linkage equilibrium results
linkage disequilibrium plink plotting LD heatmap
updated 6.9 years ago by ▴ 990 • written 6.9 years ago by ▴ 370
0
votes
0
replies
8.4k
views
Comment: C: linkage disequilibrium analysis
6.9 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
8.4k
views
Comment: C: linkage disequilibrium analysis
7.0 years ago by tarek.mohamed ▴ 370
7
votes
8
replies
8.4k
views
linkage disequilibrium analysis
LD SNPs different chromosomes
updated 3.3 years ago by 88k • written 7.0 years ago by ▴ 370
0
votes
0
replies
1.3k
views
Answer: A: SNPs and Gene Expression
7.1 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
2.3k
views
Comment: C: counting the reads that mapped to a part of transcriptome
7.1 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
2.3k
views
Answer: A: counting the reads that mapped to a part of transcriptome
7.1 years ago by tarek.mohamed ▴ 370
3
votes
0
replies
35k
views
Comment: C: How is the design in DESeq2 work?
7.1 years ago by tarek.mohamed ▴ 370
6
votes
2
replies
35k
views
Comment: C: How is the design in DESeq2 work?
7.1 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
2.2k
views
Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
7.1 years ago by tarek.mohamed ▴ 370
1
vote
3
replies
3.3k
views
compare genotypes in two vcf files
vcf genotype
updated 20 months ago by 44k • written 7.2 years ago by ▴ 370
0
votes
0
replies
3.9k
views
Comment: C: PLINK2 recode ped flag issue
7.1 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
3.9k
views
Answer: A: PLINK2 recode ped flag issue
7.1 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
2.8k
views
Answer: A: Using GAGE to Analyze Pathway Enrichment Directly from Fold Change Data
7.2 years ago by tarek.mohamed ▴ 370
1
vote
1
reply
1.8k
views
Answer: A: Converting numeric to alphanumeric allele codes
7.2 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
1.3k
views
Answer: A: Counting read ends in RNA-Seq
7.2 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
2.3k
views
Comment: C: NGS alignment image drawing
7.2 years ago by tarek.mohamed ▴ 370
8
votes
1
reply
8.2k
views
Answer: C: efetch error LWP::Protocol::https not installed
7.2 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
4.2k
views
Comment: C: Download snps within 1Mb from gene
7.2 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
2.1k
views
Answer: A: List of accession numbers for nucleotide sequences to protein sequences using R
7.2 years ago by tarek.mohamed ▴ 370
0
votes
0
replies
1.7k
views
Comment: C: Finding specific subsets of genes related with known transcription factors
7.2 years ago by tarek.mohamed ▴ 370
1
vote
2
replies
20k
views
Comment: C: Downloading gtf file for RefSeq
7.2 years ago by tarek.mohamed ▴ 370
0
votes
1
reply
20k
views
Comment: A: Downloading gtf file for RefSeq
7.2 years ago by tarek.mohamed ▴ 370
100 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6