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Comment: Comment: the fixed-effects model matrix is column rank deficient when adding a variable
3.6 years ago by Shab86 ▴ 310
0
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2.0k
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Comment: Comment: the fixed-effects model matrix is column rank deficient when adding a variable
3.6 years ago by Shab86 ▴ 310
0
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1
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1.4k
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Comment: Comment: Deleterious or Protective? --> CADD score >20 but Odds ratio <1
3.6 years ago by Shab86 ▴ 310
0
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1
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2.0k
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Answer: Answer: the fixed-effects model matrix is column rank deficient when adding a variable
3.6 years ago by Shab86 ▴ 310
2
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3
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1.4k
views
Deleterious or Protective? --> CADD score >20 but Odds ratio <1
variant deleteriousness genomics
updated 3.6 years ago by 88k • written 3.6 years ago by ▴ 310
0
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0
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2.9k
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Comment: Comment: Problems in running LDHAT
3.6 years ago by Shab86 ▴ 310
0
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1
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4.5k
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Comment: C: Convert Expression Set into a Matrix or Data Frame
updated 5.0 years ago by 44k • written 8.9 years ago by ▴ 310
1
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1
reply
2.3k
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Recombination rates for phasing & imputation
recombination LDHAT genomics
updated 5.2 years ago by • 0 • written 7.0 years ago by ▴ 310
1
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0
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1.6k
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Answer: A: Merge WGS and genotype data
5.8 years ago by Shab86 ▴ 310
3
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7
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6.0k
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Error while running BEAGLE for genotype imputation
snp SNP software error genome vcf
updated 6.5 years ago by • 0 • written 8.7 years ago by ▴ 310
3
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8
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6.3k
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How to calculate Imputation Accuracy Estimates like concordance with BEAGLE?
genome SNP R impute sequencing
updated 7.0 years ago by ▴ 10 • written 8.6 years ago by ▴ 310
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0
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3.1k
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Comment: C: imputation and changing genotypes in Beagle and FImpute
7.0 years ago by Shab86 ▴ 310
0
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1
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3.1k
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Answer: A: imputation and changing genotypes in Beagle and FImpute
7.0 years ago by Shab86 ▴ 310
0
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0
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4.2k
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Comment: C: installing usearch on Mac
7.0 years ago by Shab86 ▴ 310
0
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2
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2.4k
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VCF to BED conversion error in BEDOPS
bedops bed vcf
updated 7.0 years ago by 36k • written 7.0 years ago by ▴ 310
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0
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2.4k
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Answer: A: VCF to BED conversion error in BEDOPS
7.0 years ago by Shab86 ▴ 310
0
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1
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1.7k
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Comment: C: How to estimate the minimal amount of sequencing required for a biomarker analys
7.0 years ago by Shab86 ▴ 310
0
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1
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2.7k
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How to convert recombination rate data from LDHAT into a recombination map for imputation in IMPUTE2
recombination LD genetic map
7.0 years ago by Shab86 ▴ 310
0
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0
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17k
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Comment: C: How to convert vcf to 23andme format
7.2 years ago by Shab86 ▴ 310
2
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1
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17k
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Answer: A: How to convert vcf to 23andme format
7.2 years ago by Shab86 ▴ 310
1
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2
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2.9k
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Problems in running LDHAT
genome
3.6 years ago by Shab86 ▴ 310
0
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1
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4.7k
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Comment: C: Error executing bedops convert2bed
7.9 years ago by Shab86 ▴ 310
0
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1
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4.7k
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Comment: C: Error executing bedops convert2bed
7.9 years ago by Shab86 ▴ 310
0
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1
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4.7k
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Comment: C: Error executing bedops convert2bed
7.9 years ago by Shab86 ▴ 310
0
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0
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12k
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Comment: C: Haplotype Phasing with Shapeit2
8.3 years ago by Shab86 ▴ 310
3
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1
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2.0k
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Answer: A: statistical analysis of RNA-seq data
8.4 years ago by Shab86 ▴ 310
5
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1
reply
12k
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Answer: A: Haplotype Phasing with Shapeit2
8.4 years ago by Shab86 ▴ 310
1
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0
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1.7k
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Help in understanding PSEQ error from istats command
software error snp plink
updated 8.4 years ago by 20 • written 8.6 years ago by ▴ 310
0
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0
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2.0k
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Answer: A: need help with LD calculation with imputed genotypes
8.5 years ago by Shab86 ▴ 310
1
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0
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2.3k
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Answer: A: query for Rstudio command
8.6 years ago by Shab86 ▴ 310
0
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1
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6.3k
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Comment: C: How to calculate Imputation Accuracy Estimates like concordance with BEAGLE?
8.6 years ago by Shab86 ▴ 310
0
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0
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2.5k
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Comment: C: How to phase a WGS dataset preserving the indels within it?
8.6 years ago by Shab86 ▴ 310
0
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1
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2.5k
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Comment: C: How to phase a WGS dataset preserving the indels within it?
8.6 years ago by Shab86 ▴ 310
2
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6
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2.5k
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How to phase a WGS dataset preserving the indels within it?
SNP sequencing genome indel phasing
updated 8.6 years ago by ★ 1.9k • written 8.6 years ago by ▴ 310
5
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1
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12k
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Answer: A: LD pruning and other QC before association analysis ?
8.6 years ago by Shab86 ▴ 310
1
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1
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3.9k
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Answer: A: linear regression for removing the population effects
8.6 years ago by Shab86 ▴ 310
1
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1
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2.3k
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Answer: A: Is there any databases provide proteomic or metabolomic raw data sets?
8.6 years ago by Shab86 ▴ 310
0
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0
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4.2k
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Comment: C: Plink error File write failure
8.6 years ago by Shab86 ▴ 310
2
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0
replies
3.4k
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Answer: A: difficulty in underestanding terms and graphs
8.6 years ago by Shab86 ▴ 310
1
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1
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4.2k
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Answer: A: Plink error File write failure
8.6 years ago by Shab86 ▴ 310
1
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0
replies
11k
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Answer: A: What Is The Ratio Of Heterozygous Vs. Homozygous In An Individual?
8.6 years ago by Shab86 ▴ 310
0
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1
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6.3k
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Comment: C: How to calculate Imputation Accuracy Estimates like concordance with BEAGLE?
8.6 years ago by Shab86 ▴ 310
2
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1
reply
3.9k
views
Answer: A: Warning message: In y/gene.length.kb : longer object length is not a multiple
8.7 years ago by Shab86 ▴ 310
0
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0
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6.0k
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Comment: C: Error while running BEAGLE for genotype imputation
8.7 years ago by Shab86 ▴ 310
2
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3
replies
4.5k
views
Convert Expression Set into a Matrix or Data Frame
RNA-Seq R SNP
updated 2.4 years ago by 44k • written 8.9 years ago by ▴ 310
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