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Comment: C: Bam output of deduplication using UMItools
4.9 years ago by Ati ▴ 50
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3
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1.5k
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Bam output of deduplication using UMItools
flagstat samtools RNA-seq UMItools bam dedup
updated 20 months ago by 44k • written 4.9 years ago by ▴ 50
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1.3k
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Comment: C: High number of reads with the incorrect strand designation.
4.9 years ago by Ati ▴ 50
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1.2k
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Comment: C: memory problem runnig multiqc --interactive
4.9 years ago by Ati ▴ 50
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2
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1.2k
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memory problem runnig multiqc --interactive
RNA-Seq multiqc
updated 4.9 years ago by 147k • written 4.9 years ago by ▴ 50
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1
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1.3k
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Comment: C: High number of reads with the incorrect strand designation.
4.9 years ago by Ati ▴ 50
0
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0
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1.3k
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Comment: C: High number of reads with the incorrect strand designation.
4.9 years ago by Ati ▴ 50
4
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7
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1.3k
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High number of reads with the incorrect strand designation.
picard CollectRnaSeqMetrics RNA-Seq rna-seq Picard
4.9 years ago by Ati ▴ 50
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0
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2.6k
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Comment: C: Deduplication using UMItools
4.9 years ago by Ati ▴ 50
0
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1
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2.6k
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Comment: C: Deduplication using UMItools
4.9 years ago by Ati ▴ 50
1
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4
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2.6k
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Deduplication using UMItools
RNA-Seq bam umitools duplication Picard
updated 4.9 years ago by 104k • written 4.9 years ago by ▴ 50
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1
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1.5k
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Answer: A: Create txt file in a for loop
updated 4.9 years ago by 44k • written 4.9 years ago by ▴ 50
1
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15
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1.5k
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Create txt file in a for loop
bash loop linux
updated 4.9 years ago by ▴ 140 • written 4.9 years ago by ▴ 50
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0
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1.5k
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Comment: C: Create txt file in a for loop
4.9 years ago by Ati ▴ 50
2
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1
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1.4k
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UMI on the fastq header
UMI RNA-Seq umi-tools fastq illumina
5.0 years ago by Ati ▴ 50
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1
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2.7k
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Comment: C: How to calculate the shortest path between each pairs of genes in WGCNA
5.8 years ago by Ati ▴ 50
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3
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2.7k
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How to calculate the shortest path between each pairs of genes in WGCNA
wgcna R gene co-expression analysis
updated 5.8 years ago by 8.3k • written 5.8 years ago by ▴ 50
3
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10
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4.1k
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How to annotate positions using biomaRt R package?
r biomart
updated 20 months ago by 44k • written 8.8 years ago by ▴ 50
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0
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4.1k
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Comment: C: How to annotate positions using biomaRt R package?
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 50
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0
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2.0k
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Answer: A: How should I define contrast with more than 2 levels in DESeq2 ?
8.0 years ago by Ati ▴ 50
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1
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2.7k
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Comment: C: Why DESeq2 filter and remove genes with high count?
8.2 years ago by Ati ▴ 50
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0
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13k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
8.2 years ago by Ati ▴ 50
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0
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2.0k
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Comment: C: Motifs data base
8.5 years ago by Ati ▴ 50
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2.0k
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Comment: C: Motifs data base
8.5 years ago by Ati ▴ 50
3
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4
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2.0k
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Motifs data base
RNA-Seq Motifs DNA DREME
updated 8.5 years ago by ▴ 140 • written 8.5 years ago by ▴ 50
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0
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2.0k
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Comment: C: Co-variants in differential expression analysis
8.5 years ago by Ati ▴ 50
2
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6
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2.0k
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Co-variants in differential expression analysis
RNA-Seq sequencing DE edgeR Voom
8.5 years ago by Ati ▴ 50
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2
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2.0k
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Comment: C: Co-variants in differential expression analysis
8.5 years ago by Ati ▴ 50
0
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1
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2.5k
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Comment: C: bigwig file in UCSC custom track
8.6 years ago by Ati ▴ 50
1
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3
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2.5k
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bigwig file in UCSC custom track
UCSC bigwig RNA-Seq sequencing
updated 8.6 years ago by 11k • written 8.6 years ago by ▴ 50
0
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3
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1.7k
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How to interprate edgeR result for different comparison
RNA-Seq edgeR R next-gen
updated 8.7 years ago by 5.7k • written 8.7 years ago by ▴ 50
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0
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1.7k
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Comment: C: How to interprate edgeR result for different comparison
8.7 years ago by Ati ▴ 50
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0
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2.7k
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Comment: C: Pathway analysis using R
8.7 years ago by Ati ▴ 50
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0
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2.2k
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Comment: C: How to get sequence using masked repeats?
8.7 years ago by Ati ▴ 50
2
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4
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2.2k
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How to get sequence using masked repeats?
UCSC sequence
8.7 years ago by Ati ▴ 50
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0
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2.2k
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Comment: C: How to get sequence using masked repeats?
8.7 years ago by Ati ▴ 50
1
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2
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2.7k
views
Pathway analysis using R
RNA-Seq R
updated 8.7 years ago by ★ 5.2k • written 8.7 years ago by ▴ 50
1
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2
replies
3.1k
views
Convert ensembl gene ID
RNA-Seq Ensembl
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 50
0
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1
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4.1k
views
Comment: C: How to annotate positions using biomaRt R package?
8.8 years ago by Ati ▴ 50
0
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0
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4.1k
views
Comment: C: How to annotate positions using biomaRt R package?
8.8 years ago by Ati ▴ 50
0
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1
reply
4.1k
views
Comment: C: How to annotate positions using biomaRt R package?
8.8 years ago by Ati ▴ 50
0
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0
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4.1k
views
Comment: C: How to annotate positions using biomaRt R package?
8.8 years ago by Ati ▴ 50
0
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0
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23k
views
Comment: Comment: Bed to BedGraph
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 50
0
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1
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23k
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Comment: Comment: Bed to BedGraph
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 50
0
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1
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23k
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Comment: C: Bed to BedGraph
8.8 years ago by Ati ▴ 50
9
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7
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23k
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Bed to BedGraph
RNA-Seq DaPars bedgraph bed
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 50
2
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1
reply
12k
views
how to download gene annotation bed file from ensembl?
ensembl RNA-Seq genome ucsc
updated 20 months ago by 44k • written 8.8 years ago by ▴ 50
5
votes
4
replies
4.5k
views
How to download intronic positions from Ensembl
genome ensembl
updated 8.8 years ago by ★ 1.2k • written 8.8 years ago by ▴ 50
0
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0
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4.5k
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Comment: C: How to download intronic positions from Ensembl
8.8 years ago by Ati ▴ 50
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