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5
votes
2
replies
2.8k
views
Tool: Coovar: Co-Occurring Variant Analyzer
snp variant-annotation
updated 13 months ago by 150k • written 12.4 years ago by ★ 3.1k
96
votes
16
replies
27k
views
15 follow
Are we tricking ourselves with batch effect correction?
combat batch-effect sva
updated 2.2 years ago by ▴ 20 • written 9.8 years ago by ★ 3.1k
26
votes
24
replies
16k
views
16 follow
Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing Data?
cancer exome-sequencing copynumber
updated 2.9 years ago by ▴ 380 • written 11.2 years ago by ★ 3.1k
1
vote
1
reply
74k
views
Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.8 years ago by 45k • written 10.9 years ago by ★ 3.1k
2
votes
0
replies
74k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.8 years ago by 45k • written 10.9 years ago by ★ 3.1k
1
vote
0
replies
74k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.8 years ago by 45k • written 9.8 years ago by ★ 3.1k
3
votes
0
replies
3.8k
views
Answer: A: Downloadable database for human pathways and the associated genes
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 3.1k
0
votes
0
replies
8.1k
views
Comment: C: Is the DAVID knowledgebase not updated any more?
updated 5.2 years ago by 45k • written 10.9 years ago by ★ 3.1k
4
votes
1
reply
6.2k
views
Answer: A: How to read Affymetrix CYCHP File
updated 5.2 years ago by 45k • written 10.9 years ago by ★ 3.1k
0
votes
0
replies
23k
views
Answer: A: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 3.1k
0
votes
0
replies
15k
views
Comment: C: What is the best programming language for NGS data analysis pipeline development
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 3.1k
1
vote
0
replies
15k
views
Answer: A: What is the best programming language for NGS data analysis pipeline development
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 3.1k
0
votes
0
replies
5.1k
views
Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 3.1k
1
vote
0
replies
5.0k
views
Answer: A: Is There Any Free Software To Create Nice Visual Of Ppi Networks Along With Cell
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 3.1k
3
votes
0
replies
4.2k
views
Answer: A: Music Proximity Analysis Mutation Diagrams
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 3.1k
1
vote
0
replies
5.4k
views
Answer: A: Lolliplot Link On The Tvap Website
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 3.1k
1
vote
0
replies
74k
views
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 3.1k
2
votes
1
reply
18k
views
Comment: C: GSEA Preranked analysis on RNA-SEQ
updated 5.3 years ago by 45k • written 9.4 years ago by ★ 3.1k
0
votes
0
replies
6.8k
views
Comment: C: Acceptable "Percentage Of Usable Bases On Target" In Exome Sequencing Experiment
updated 5.4 years ago by 45k • written 9.5 years ago by ★ 3.1k
3
votes
1
reply
19k
views
Comment: C: How Do Heterozygotes And Somatic Mutations Manifest In Sequencing Projects
updated 5.6 years ago by 45k • written 11.2 years ago by ★ 3.1k
6
votes
0
replies
78k
views
Answer: A: Extract User Defined Region From An Fasta File
updated 5.6 years ago by 45k • written 13.7 years ago by ★ 3.1k
0
votes
0
replies
32k
views
Answer: A: Amino Acid Change To Genomic Location
updated 5.8 years ago by 45k • written 12.2 years ago by ★ 3.1k
2
votes
0
replies
2.3k
views
Answer: A: CRISPR off-target effects causing unexpected mutations - good science or media h
7.8 years ago by Christian ★ 3.1k
8
votes
10
replies
7.5k
views
7 follow
DESeq2: Find differentially expressed genes specific to one condition
deseq2 RNA-Seq
updated 2.3 years ago by 45k • written 9.8 years ago by ★ 3.1k
0
votes
1
reply
7.5k
views
Comment: C: DESeq2: Find differentially expressed genes specific to one condition
7.9 years ago by Christian ★ 3.1k
0
votes
0
replies
2.5k
views
Answer: A: Confusion : Why and how does a nucleotide in Reference Genome is differenet from
8.1 years ago by Christian ★ 3.1k
0
votes
0
replies
8.0k
views
Answer: A: Aligning paired end fastq files dumped from SRA
8.2 years ago by Christian ★ 3.1k
0
votes
0
replies
3.3k
views
Comment: C: Variant Effect Predictor parameters for custom gff and fasta
8.2 years ago by Christian ★ 3.1k
1
vote
0
replies
12k
views
Answer: A: Capping coverage in bam file
updated 8.2 years ago by 6.1k • written 9.6 years ago by ★ 3.1k
0
votes
0
replies
2.0k
views
Comment: C: run our pipeline on TCGA data
8.3 years ago by Christian ★ 3.1k
3
votes
0
replies
6.3k
views
Comment: C: Use a workflow management tool to manage your computational pipelines
8.4 years ago by Christian ★ 3.1k
0
votes
1
reply
4.3k
views
Comment: C: Bioinformatician/Bioinformatics Data Analyst, Vienna, Austria
8.5 years ago by Christian ★ 3.1k
0
votes
0
replies
3.7k
views
Comment: C: Recommended tools for positional gene enrichment (PGE) analysis?
8.5 years ago by Christian ★ 3.1k
2
votes
3
replies
3.7k
views
Recommended tools for positional gene enrichment (PGE) analysis?
enrichment
updated 8.6 years ago by • 0 • written 9.9 years ago by ★ 3.1k
0
votes
0
replies
4.4k
views
Comment: C: What's the recommended graduate educational path for a fullstack developer to tr
8.6 years ago by Christian ★ 3.1k
0
votes
0
replies
4.3k
views
Comment: C: Bioinformatician/Bioinformatics Data Analyst, Vienna, Austria
8.6 years ago by Christian ★ 3.1k
1
vote
9
replies
4.3k
views
Job: Bioinformatician/Bioinformatics Data Analyst, Vienna, Austria
next-gen
updated 24 months ago by 45k • written 8.7 years ago by ★ 3.1k
0
votes
0
replies
3.4k
views
Comment: C: Presence of both forward and reverse motifs in transcription factor binding site
8.7 years ago by Christian ★ 3.1k
0
votes
1
reply
4.3k
views
Comment: C: Bioinformatician/Bioinformatics Data Analyst, Vienna, Austria
8.7 years ago by Christian ★ 3.1k
0
votes
0
replies
8.1k
views
Comment: C: Is the DAVID knowledgebase not updated any more?
8.7 years ago by Christian ★ 3.1k
1
vote
1
reply
27k
views
Comment: C: Are we tricking ourselves with batch effect correction?
8.8 years ago by Christian ★ 3.1k
28
votes
10
replies
23k
views
9 follow
Which software do you use for RNA-seq data quality control?
RNA-Seq quality-control qc
updated 3.3 years ago by 45k • written 10.8 years ago by ★ 3.1k
0
votes
2
replies
8.1k
views
Answer: A: Is the DAVID knowledgebase not updated any more?
8.8 years ago by Christian ★ 3.1k
14
votes
20
replies
8.1k
views
10 follow
Is the DAVID knowledgebase not updated any more?
DAVID pathway-analysis gene-set-enrichment
updated 3.3 years ago by 45k • written 10.9 years ago by ★ 3.1k
0
votes
0
replies
3.4k
views
Comment: C: Clustering protein sequences
8.9 years ago by Christian ★ 3.1k
3
votes
1
reply
2.5k
views
Perl API for latest version of Tabix (now part of HTSlib)?
tabix HTSlib
updated 9.0 years ago by ▴ 60 • written 9.7 years ago by ★ 3.1k
0
votes
0
replies
2.1k
views
Comment: C: different phenotypes using RNA-seq and microarray analysis
9.1 years ago by Christian ★ 3.1k
3
votes
1
reply
3.6k
views
Answer: A: Wrong predict consequence in variants using VEP Ensembl
9.1 years ago by Christian ★ 3.1k
0
votes
0
replies
4.6k
views
Comment: C: Buying computational resources vs. renting allocation on cluster
9.2 years ago by Christian ★ 3.1k
2
votes
0
replies
4.6k
views
Comment: C: Buying computational resources vs. renting allocation on cluster
9.2 years ago by Christian ★ 3.1k
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