Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
616
views
Comment: Comment: Gene Exons Painter
6 weeks ago by benformatics 4.1k
0
votes
0
replies
838
views
Comment: Comment: miRNA-seq normalization
11 weeks ago by benformatics 4.1k
1
vote
1
reply
452
views
Answer: Answer: SpliceAI custom gene annotation file
3 months ago by benformatics 4.1k
2
votes
1
reply
605
views
Answer: Answer: is there any way to normalize the counts and compare it for the splicing quantif
4 months ago by benformatics 4.1k
0
votes
0
replies
829
views
Comment: Comment: Number of reads supporting a structural variant value in Dragen structural varia
5 months ago by benformatics 4.1k
0
votes
1
reply
829
views
Answer: Answer: Number of reads supporting a structural variant value in Dragen structural varia
5 months ago by benformatics 4.1k
0
votes
1
reply
721
views
Answer: Answer: Interpret IGV
6 months ago by benformatics 4.1k
1
vote
1
reply
833
views
Comment: Comment: heterozygous variant on the X chromosome
6 months ago by benformatics 4.1k
1
vote
1
reply
833
views
Comment: Comment: heterozygous variant on the X chromosome
6 months ago by benformatics 4.1k
3
votes
1
reply
833
views
Answer: Answer: heterozygous variant on the X chromosome
6 months ago by benformatics 4.1k
1
vote
1
reply
802
views
How to determine intra-run and inter-run repeatability in statistically sound manner?
Validation
updated 6 months ago by 5.0k • written 6 months ago by 4.1k
1
vote
1
reply
1.6k
views
Comment: Comment: HTSeq-count vs. FeatureCounts: Significant Difference in Results
7 months ago by benformatics 4.1k
0
votes
1
reply
1.4k
views
Answer: Answer: What is a genomic range that would almost always get decent WGS coverage but is
7 months ago by benformatics 4.1k
0
votes
0
replies
2.4k
views
Comment: Comment: RNA-Seq mutation calling without germline data
7 months ago by benformatics 4.1k
1
vote
1
reply
1.6k
views
Answer: Answer: HTSeq-count vs. FeatureCounts: Significant Difference in Results
7 months ago by benformatics 4.1k
0
votes
0
replies
1.4k
views
Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
7 months ago by benformatics 4.1k
1
vote
1
reply
1.4k
views
Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
8 months ago by benformatics 4.1k
2
votes
1
reply
2.4k
views
Answer: Answer: RNA-Seq mutation calling without germline data
8 months ago by benformatics 4.1k
1
vote
1
reply
4.0k
views
Comment: Comment: New Illumina error mode, new BBTools release (39.09) to deal with it
9 months ago by benformatics 4.1k
0
votes
1
reply
5.5k
views
Comment: Comment: NGS forensics: how to know if data is fabricated
13 months ago by benformatics 4.1k
2
votes
0
replies
5.5k
views
Comment: Comment: NGS forensics: how to know if data is fabricated
13 months ago by benformatics 4.1k
2
votes
0
replies
16k
views
Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
13 months ago by benformatics 4.1k
1
vote
0
replies
731
views
Answer: Answer: Exon often targeted by mobile element insertions?
16 months ago by benformatics 4.1k
0
votes
0
replies
693
views
GATK SelectVariants --remove-unused-alternates dropping real INDELs?
GATK
19 months ago by benformatics 4.1k
0
votes
0
replies
1.0k
views
Comment: Comment: STAR GeneCounts for most genes are 0
19 months ago by benformatics 4.1k
2
votes
1
reply
2.1k
views
Answer: Answer: Paired-end RNA seq (NextSeq2000): 1-3% if R2 reads are only contain G bases
20 months ago by benformatics 4.1k
0
votes
0
replies
1.0k
views
Comment: Comment: unbiased clustering of these top 50 genes in seurat
20 months ago by benformatics 4.1k
0
votes
0
replies
1.1k
views
Answer: Answer: How to plot two categorical variables in ggridges?
20 months ago by benformatics 4.1k
1
vote
0
replies
1.1k
views
Comment: Comment: How to plot two categoric variables in ggridges?
20 months ago by benformatics 4.1k
1
vote
1
reply
2.8k
views
Answer: Answer: Map genome positions onto protein coordinates?
20 months ago by benformatics 4.1k
1
vote
0
replies
1.3k
views
Answer: Answer: Get discordant read pairs from bam
20 months ago by benformatics 4.1k
1
vote
1
reply
5.3k
views
Comment: Comment: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
20 months ago by benformatics 4.1k
1
vote
1
reply
2.8k
views
Answer: Answer: Discussion: Uploading terrabytes of data to NCBI SRA
22 months ago by benformatics 4.1k
1
vote
0
replies
2.0k
views
Answer: Answer: insert size in bam file do not make sense
23 months ago by benformatics 4.1k
5
votes
0
replies
2.5k
views
Answer: Answer: How to import a gtf file in R so that it appears in tabular format as if it were
23 months ago by benformatics 4.1k
1
vote
1
reply
964
views
Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
23 months ago by benformatics 4.1k
0
votes
0
replies
1.6k
views
Answer: Answer: How to label clusters from a UMAP
23 months ago by benformatics 4.1k
1
vote
0
replies
1.5k
views
Comment: Comment: Identify Alternative Splicing Event using exon and junction count table
23 months ago by benformatics 4.1k
0
votes
1
reply
4.0k
views
Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
23 months ago by benformatics 4.1k
1
vote
0
replies
2.8k
views
Answer: Answer: I want to rename sequence headers
updated 23 months ago by 45k • written 23 months ago by 4.1k
0
votes
1
reply
1.9k
views
Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
23 months ago by benformatics 4.1k
1
vote
1
reply
1.9k
views
Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
23 months ago by benformatics 4.1k
0
votes
0
replies
3.2k
views
Comment: Comment: monocle single cell differential expression: error message for HSMM <- estimateD
23 months ago by benformatics 4.1k
0
votes
1
reply
2.0k
views
Comment: Comment: gene id
24 months ago by benformatics 4.1k
0
votes
1
reply
2.0k
views
Comment: Comment: gene id
24 months ago by benformatics 4.1k
0
votes
0
replies
998
views
Answer: Answer: 3' Single Cell RNA Seq Reads mapping to promoter region of gene
24 months ago by benformatics 4.1k
0
votes
0
replies
1.8k
views
Comment: Comment: Analize RNA-seq data using Hisat2
24 months ago by benformatics 4.1k
1
vote
0
replies
1.5k
views
Comment: Comment: Filtering mitochondrial reads from ATAC-Seq aligned reads- what to do with reads
2.0 years ago by benformatics 4.1k
1
vote
0
replies
1.2k
views
Comment: Comment: Is the gene-specific PCR efficiency a serious concern for intrasample comparison
2.1 years ago by benformatics 4.1k
0
votes
1
reply
1.9k
views
Comment: Comment: error in Genome Mepping by BWA tools in Linux
2.1 years ago by benformatics 4.1k
495 results • Page 1 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6