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Comment: Comment: HTSeq-count vs. FeatureCounts: Significant Difference in Results
23 days ago by benformatics 4.0k
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727
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Answer: Answer: What is a genomic range that would almost always get decent WGS coverage but is
24 days ago by benformatics 4.0k
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1.0k
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Comment: Comment: RNA-Seq mutation calling without germline data
24 days ago by benformatics 4.0k
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646
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Answer: Answer: HTSeq-count vs. FeatureCounts: Significant Difference in Results
24 days ago by benformatics 4.0k
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678
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
4 weeks ago by benformatics 4.0k
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623
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Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
7 weeks ago by benformatics 4.0k
2
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1
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1.0k
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Answer: Answer: RNA-Seq mutation calling without germline data
8 weeks ago by benformatics 4.0k
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1.5k
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Comment: Comment: New Illumina error mode, new BBTools release (39.09) to deal with it
9 weeks ago by benformatics 4.0k
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3.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
6 months ago by benformatics 4.0k
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3.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
6 months ago by benformatics 4.0k
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0
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15k
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Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
7 months ago by benformatics 4.0k
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0
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371
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Answer: Answer: Exon often targeted by mobile element insertions?
9 months ago by benformatics 4.0k
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0
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444
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GATK SelectVariants --remove-unused-alternates dropping real INDELs?
GATK
12 months ago by benformatics 4.0k
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0
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681
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Comment: Comment: STAR GeneCounts for most genes are 0
12 months ago by benformatics 4.0k
2
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1
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1.3k
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Answer: Answer: Paired-end RNA seq (NextSeq2000): 1-3% if R2 reads are only contain G bases
13 months ago by benformatics 4.0k
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0
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676
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Comment: Comment: unbiased clustering of these top 50 genes in seurat
13 months ago by benformatics 4.0k
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0
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691
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Answer: Answer: How to plot two categorical variables in ggridges?
13 months ago by benformatics 4.0k
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0
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691
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Comment: Comment: How to plot two categoric variables in ggridges?
13 months ago by benformatics 4.0k
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1
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1.8k
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Answer: Answer: Map genome positions onto protein coordinates?
13 months ago by benformatics 4.0k
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0
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819
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Answer: Answer: Get discordant read pairs from bam
13 months ago by benformatics 4.0k
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1
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4.2k
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Comment: Comment: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
14 months ago by benformatics 4.0k
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1
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1.9k
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Answer: Answer: Discussion: Uploading terrabytes of data to NCBI SRA
15 months ago by benformatics 4.0k
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0
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1.3k
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Answer: Answer: insert size in bam file do not make sense
16 months ago by benformatics 4.0k
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0
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1.7k
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Answer: Answer: How to import a gtf file in R so that it appears in tabular format as if it were
16 months ago by benformatics 4.0k
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1
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608
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Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
16 months ago by benformatics 4.0k
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1.2k
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Answer: Answer: How to label clusters from a UMAP
16 months ago by benformatics 4.0k
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0
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973
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Comment: Comment: Identify Alternative Splicing Event using exon and junction count table
16 months ago by benformatics 4.0k
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1
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2.9k
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Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
16 months ago by benformatics 4.0k
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0
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1.9k
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Answer: Answer: I want to rename sequence headers
updated 16 months ago by 44k • written 16 months ago by 4.0k
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1
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1.3k
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Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
16 months ago by benformatics 4.0k
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1
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1.3k
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Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
16 months ago by benformatics 4.0k
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0
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2.4k
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Comment: Comment: monocle single cell differential expression: error message for HSMM <- estimateD
16 months ago by benformatics 4.0k
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1
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1.2k
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Comment: Comment: gene id
17 months ago by benformatics 4.0k
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1
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1.2k
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Comment: Comment: gene id
17 months ago by benformatics 4.0k
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0
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683
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Answer: Answer: 3' Single Cell RNA Seq Reads mapping to promoter region of gene
17 months ago by benformatics 4.0k
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0
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1.2k
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Comment: Comment: Analize RNA-seq data using Hisat2
17 months ago by benformatics 4.0k
1
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0
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995
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Comment: Comment: Filtering mitochondrial reads from ATAC-Seq aligned reads- what to do with reads
17 months ago by benformatics 4.0k
1
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0
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856
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Comment: Comment: Is the gene-specific PCR efficiency a serious concern for intrasample comparison
18 months ago by benformatics 4.0k
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1
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1.3k
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Comment: Comment: error in Genome Mepping by BWA tools in Linux
19 months ago by benformatics 4.0k
2
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0
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836
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Answer: Answer: Fastqs different lanes
19 months ago by benformatics 4.0k
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0
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864
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Comment: Comment: Chance that DNA with 3N nucleotide encodes 2 protein with size of N amino-acids
19 months ago by benformatics 4.0k
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0
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1.4k
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Comment: Comment: How do I project known tSNE coordinates onto SeuratObject
19 months ago by benformatics 4.0k
1
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1
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1.4k
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Answer: Answer: How do I project known tSNE coordinates onto SeuratObject
19 months ago by benformatics 4.0k
0
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1
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864
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Comment: Comment: Chance that DNA with 3N nucleotide encodes 2 protein with size of N amino-acids
19 months ago by benformatics 4.0k
0
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1
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5.4k
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Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
19 months ago by benformatics 4.0k
1
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1
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5.4k
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Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
19 months ago by benformatics 4.0k
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0
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1.2k
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Comment: Comment: Remove string from Seurat object metadata
19 months ago by benformatics 4.0k
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1
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1.2k
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Answer: Answer: Remove string from Seurat object metadata
19 months ago by benformatics 4.0k
1
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1
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5.4k
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Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
19 months ago by benformatics 4.0k
0
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1
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5.5k
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Comment: Comment: What are the advantages of using the T2T as a reference vs GRCh38 today?
19 months ago by benformatics 4.0k
484 results • Page 1 of 10
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