Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
731
views
Comment: Comment: Merged BAM has more reads than sum of parts
19 months ago by benformatics 4.0k
0
votes
1
reply
2.0k
views
Comment: Comment: Can you swap reference genome releases ?
20 months ago by benformatics 4.0k
0
votes
0
replies
797
views
Comment: Comment: Non-zero expression counts from deleted genes
20 months ago by benformatics 4.0k
0
votes
0
replies
884
views
Comment: Comment: R script error R aborted or encountered a fatal error
20 months ago by benformatics 4.0k
0
votes
1
reply
797
views
Comment: Comment: Non-zero expression counts from deleted genes
20 months ago by benformatics 4.0k
0
votes
0
replies
997
views
Answer: Answer: divide coordinates into equal number of bins
20 months ago by benformatics 4.0k
0
votes
0
replies
1.1k
views
Answer: Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
20 months ago by benformatics 4.0k
1
vote
0
replies
1.8k
views
Answer: Answer: Recommendation for (Alternative) Splicing analysis packages for bulk RNA-seq da
20 months ago by benformatics 4.0k
3
votes
0
replies
847
views
Comment: Comment: advice on course selection for a bioinformatics career.
20 months ago by benformatics 4.0k
0
votes
0
replies
770
views
Comment: Comment: Processing fastqs generated by inDrop protocol
20 months ago by benformatics 4.0k
1
vote
0
replies
1.4k
views
Comment: Comment: samtools idxstats not removing ChrM
20 months ago by benformatics 4.0k
0
votes
1
reply
773
views
Comment: Comment: Problem in converting SAM to BAM file by DROP SEQ
20 months ago by benformatics 4.0k
1
vote
0
replies
1.4k
views
Comment: Comment: samtools idxstats not removing ChrM
20 months ago by benformatics 4.0k
0
votes
0
replies
2.4k
views
Comment: Comment: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
20 months ago by benformatics 4.0k
0
votes
1
reply
902
views
Comment: Comment: CABSDock:fortran 2018 deleted feature
21 months ago by benformatics 4.0k
1
vote
0
replies
654
views
Answer: Answer: RNA seq analysis differential expression analysis
21 months ago by benformatics 4.0k
1
vote
1
reply
622
views
Comment: Comment: Bar plots at genera level with absolute percentage difference between two groups
21 months ago by benformatics 4.0k
0
votes
1
reply
5.5k
views
Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
updated 6 months ago by 44k • written 21 months ago by 4.0k
0
votes
1
reply
5.5k
views
Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
updated 6 months ago by 44k • written 21 months ago by 4.0k
0
votes
1
reply
5.5k
views
Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
21 months ago by benformatics 4.0k
0
votes
1
reply
5.5k
views
Answer: Answer: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
6 months ago by benformatics 4.0k
0
votes
0
replies
835
views
Comment: Comment: RNAseq matrix containing zero values
21 months ago by benformatics 4.0k
0
votes
0
replies
749
views
Answer: Answer: Mate-pair sequencing
22 months ago by benformatics 4.0k
0
votes
0
replies
2.2k
views
Comment: Comment: change color and scale in SpatialFeaturePlot
22 months ago by benformatics 4.0k
0
votes
1
reply
1.3k
views
Comment: Comment: Some questions on RAD paired-end sequencing
22 months ago by benformatics 4.0k
0
votes
1
reply
1.3k
views
Answer: Answer: Some questions on RAD paired-end sequencing
22 months ago by benformatics 4.0k
0
votes
0
replies
1.8k
views
Comment: Comment: How to remove un-paired reads from BAM after filtering?
22 months ago by benformatics 4.0k
3
votes
5
replies
1.8k
views
How to remove un-paired reads from BAM after filtering?
picard samtools
updated 17 months ago by 44k • written 22 months ago by 4.0k
2
votes
1
reply
1.8k
views
Answer: Answer: How to remove un-paired reads from BAM after filtering?
22 months ago by benformatics 4.0k
0
votes
1
reply
1.8k
views
Comment: Comment: How to remove un-paired reads from BAM after filtering?
22 months ago by benformatics 4.0k
1
vote
0
replies
1.1k
views
Comment: Comment: What exactly are unmappable regions?
22 months ago by benformatics 4.0k
3
votes
1
reply
1.8k
views
Comment: Comment: Why did my data get worse after trimming with trimmomatic?
22 months ago by benformatics 4.0k
0
votes
1
reply
1.2k
views
Comment: Comment: Human transcriptome STAR multi-mapped problem
23 months ago by benformatics 4.0k
1
vote
2
replies
3.2k
views
Comment: Comment: How to find rna strand direction before alignment?
23 months ago by benformatics 4.0k
0
votes
2
replies
3.2k
views
Comment: Comment: How to find rna strand direction before alignment?
23 months ago by benformatics 4.0k
1
vote
0
replies
1.0k
views
Answer: Answer: Does anyone have experience using findtail?
24 months ago by benformatics 4.0k
1
vote
0
replies
3.2k
views
Answer: Answer: How to find rna strand direction before alignment?
24 months ago by benformatics 4.0k
1
vote
0
replies
489
views
Answer: Answer: comparison of conditions scRNA-seq
24 months ago by benformatics 4.0k
0
votes
1
reply
9.6k
views
Comment: Comment: CPM or TPM in GSEA analysis
24 months ago by benformatics 4.0k
1
vote
1
reply
1.2k
views
Answer: Answer: Treating "patient" as a batch effect
2.0 years ago by benformatics 4.0k
0
votes
1
reply
1.2k
views
Comment: Comment: Proportion of mitochondrial reads atac seq
2.0 years ago by benformatics 4.0k
1
vote
2
replies
1.2k
views
Answer: Answer: Proportion of mitochondrial reads atac seq
2.0 years ago by benformatics 4.0k
1
vote
0
replies
718
views
Answer: Answer: PolyA Tail Detection in RNA-seq data
2.0 years ago by benformatics 4.0k
1
vote
1
reply
826
views
Answer: Answer: Extract list of mapped UMIs in cell ranger output
2.0 years ago by benformatics 4.0k
2
votes
0
replies
1.7k
views
Answer: Answer: How to get the canonical transcript from gene ensemble ID
2.0 years ago by benformatics 4.0k
2
votes
1
reply
691
views
Answer: Answer: Estimating mRNA 5' degradation from RNA-seq illumina strand-specific reads
2.0 years ago by benformatics 4.0k
4
votes
0
replies
6.5k
views
Answer: Answer: Does a PhD or work experience set you up better to do bioinformatics work in ind
10 months ago by benformatics 4.0k
0
votes
1
reply
918
views
Answer: Answer: How to convert trinotate results into GFF3
2.1 years ago by benformatics 4.0k
1
vote
1
reply
1.1k
views
Answer: Answer: How to tell if GEO SRA is paired or single?
2.1 years ago by benformatics 4.0k
1
vote
0
replies
2.6k
views
Comment: Comment: How much RAM for scRNAseq 200K cells?
2.1 years ago by benformatics 4.0k
484 results • Page 2 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6