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Comment: Comment: scRNA-Seq datasets with labels
2.1 years ago by benformatics 4.0k
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Answer: Answer: Which Bioinformatics Master's degree is better?
2.1 years ago by benformatics 4.0k
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Answer: Answer: Protein sequence from a gene fusion?
2.1 years ago by benformatics 4.0k
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Comment: Comment: Does chemistry have significant effects on my single nucleus dataset?
2.1 years ago by benformatics 4.0k
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Comment: Comment: How can I get counts from transgenic expression in RNA-seq data?
2.1 years ago by benformatics 4.0k
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Answer: Answer: How can I get counts from transgenic expression in RNA-seq data?
2.1 years ago by benformatics 4.0k
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Comment: Comment: Why an extremely large number of reads are mapped to several chromosomes in RNA-
2.1 years ago by benformatics 4.0k
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Comment: Comment: scRNA-Seq datasets with labels
2.1 years ago by benformatics 4.0k
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Comment: Comment: Quantseq 3' seq alignment with kallisto
2.1 years ago by benformatics 4.0k
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1.9k
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Answer: Answer: Quantseq 3' seq alignment with kallisto
2.1 years ago by benformatics 4.0k
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Comment: Comment: convert a list of plotly plots to an HTML output
2.1 years ago by benformatics 4.0k
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1.6k
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Answer: Answer: convert a list of plotly plots to an HTML output
2.1 years ago by benformatics 4.0k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.1 years ago by benformatics 4.0k
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Comment: Comment: Public availability of de-identified patient data
2.1 years ago by benformatics 4.0k
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Answer: Answer: How to select rows which has NA in any column in the dataframe in R?
2.1 years ago by benformatics 4.0k
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Comment: Comment: Error in mitch reports in R
2.1 years ago by benformatics 4.0k
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858
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Answer: Answer: To order list of genes
2.1 years ago by benformatics 4.0k
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Comment: Comment: Unaligned Reads From Bowtie2
2.1 years ago by benformatics 4.0k
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2.9k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.2 years ago by benformatics 4.0k
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1.2k
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Answer: Answer: HELP- analysis RNa-seq from GEO
2.2 years ago by benformatics 4.0k
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705
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Answer: Answer: How to get/make a .gf file? rmats2sashimi
2.2 years ago by benformatics 4.0k
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Comment: Comment: Allele flip in GATK
2.2 years ago by benformatics 4.0k
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Comment: Comment: Unaligned Reads From Bowtie2
2.2 years ago by benformatics 4.0k
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2.9k
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Comment: Comment: star --readFilesIn error when using unmapped.out.mate1/2 files
2.2 years ago by benformatics 4.0k
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2.9k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.2 years ago by benformatics 4.0k
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616
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Answer: Answer: Need an original PacBio SMRT Sequel fastq file from 2020
2.2 years ago by benformatics 4.0k
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680
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Comment: Comment: Manually adding genes of interest to transcriptome for RNASeq DE?
2.2 years ago by benformatics 4.0k
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Answer: Answer: Conceptual questions regarding computational genome/annotation versions and the
2.2 years ago by benformatics 4.0k
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739
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Answer: Answer: Low expression of key transcripts in scRNAseq dataset after deeper sequencing
2.2 years ago by benformatics 4.0k
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757
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Comment: Comment: How to analyse different sample number fastq files
2.2 years ago by benformatics 4.0k
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686
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Answer: Answer: Irreproducibility Discovery Rate for broad histone marks.
2.2 years ago by benformatics 4.0k
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Comment: Comment: rMATS reads used is zero (0)
2.2 years ago by benformatics 4.0k
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1.9k
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Comment: Comment: rMATS reads used is zero (0)
2.2 years ago by benformatics 4.0k
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1.9k
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Answer: Answer: rMATS reads used is zero (0)
2.2 years ago by benformatics 4.0k
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2.9k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.2 years ago by benformatics 4.0k
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602
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Answer: Answer: How can I get polyA position and coverage from polyA(+)RNASeq data?
2.2 years ago by benformatics 4.0k
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664
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Answer: Answer: Calculate PSI in gtf files in python
2.2 years ago by benformatics 4.0k
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Comment: Comment: 5' and 3' UTRs in RNA regulation
2.2 years ago by benformatics 4.0k
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1
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685
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Answer: Answer: Do LoF/GoF count toward transcript count?
2.2 years ago by benformatics 4.0k
2
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1
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772
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Answer: Answer: R programming
2.2 years ago by benformatics 4.0k
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1.1k
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Comment: Comment: Identifying tumor vs normal cells in scRNAseq samples
2.2 years ago by benformatics 4.0k
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979
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Comment: Comment: When a gene "fails" (ie doesn't express optimally or at all), does another gene
2.2 years ago by benformatics 4.0k
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1.3k
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Comment: Comment: Leaky RNA
2.3 years ago by benformatics 4.0k
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39k
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Comment: Comment: read depth using samtools
2.3 years ago by benformatics 4.0k
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39k
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Comment: Comment: read depth using samtools
2.3 years ago by benformatics 4.0k
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517
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Comment: Comment: Statistical test to decide key clusters
2.3 years ago by benformatics 4.0k
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889
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Comment: Comment: Difference in sashimi plot between single-cell versus bulk RNA-seq data
2.3 years ago by benformatics 4.0k
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1.9k
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Answer: Answer: How to delete all numbers after dot in a column in R?
2.3 years ago by benformatics 4.0k
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4.8k
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Comment: Comment: Extract reads from BAM file with known variant
2.3 years ago by benformatics 4.0k
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1
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4.8k
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Comment: Comment: Extract reads from BAM file with known variant
2.3 years ago by benformatics 4.0k
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