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Comment: Comment: Extract reads from BAM file with known variant
2.3 years ago by benformatics 4.0k
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4.8k
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Comment: Comment: Extract reads from BAM file with known variant
2.3 years ago by benformatics 4.0k
0
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3
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4.8k
views
Answer: Answer: Extract reads from BAM file with known variant
2.3 years ago by benformatics 4.0k
0
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1
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4.8k
views
Comment: Comment: Extract reads from BAM file with known variant
2.3 years ago by benformatics 4.0k
0
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1
reply
4.8k
views
Comment: Comment: Extract reads from BAM file with known variant
2.3 years ago by benformatics 4.0k
0
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1
reply
4.8k
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Comment: Comment: Extract reads from BAM file with known variant
2.3 years ago by benformatics 4.0k
0
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1
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706
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Comment: Comment: Identifying and quantifying transcript variants in RNA-seq data
2.4 years ago by benformatics 4.0k
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0
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665
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Comment: Comment: Spiking variants into BAM file
2.4 years ago by benformatics 4.0k
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3
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790
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resolving specific clusters from data (spectral clustering)
clustering
updated 2.4 years ago by ★ 28k • written 2.4 years ago by 4.0k
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0
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790
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Comment: Comment: resolving specific clusters from data (spectral clustering)
2.4 years ago by benformatics 4.0k
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0
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891
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Comment: Comment: 3 reads with the same ID in sam file
2.4 years ago by benformatics 4.0k
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0
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764
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Answer: Answer: GRanges strand identification
2.5 years ago by benformatics 4.0k
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3.1k
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Answer: Answer: What counts as a valid biological replicate in single cell RNAseq?
2.5 years ago by benformatics 4.0k
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1
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1.7k
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Comment: Comment: Mitochondrial genes as Seurat markers in nuclear sequencing data
2.5 years ago by benformatics 4.0k
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1.9k
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Answer: Answer: Is it possible to calculate TPM using 10X Genomics public data?
2.5 years ago by benformatics 4.0k
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2.1k
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Comment: Comment: Read counts an order of magnitude higher on one chromosome
2.5 years ago by benformatics 4.0k
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1
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2.1k
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Answer: Answer: Read counts an order of magnitude higher on one chromosome
2.5 years ago by benformatics 4.0k
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1
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2.1k
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Comment: Comment: Read counts an order of magnitude higher on one chromosome
2.5 years ago by benformatics 4.0k
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0
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13k
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Comment: Comment: Can Illumina bcl2fastq use only one index for demultiplexing dual index sequenci
2.5 years ago by benformatics 4.0k
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1
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13k
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Comment: Comment: Can Illumina bcl2fastq use only one index for demultiplexing dual index sequenci
2.5 years ago by benformatics 4.0k
0
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1
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2.1k
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Answer: Answer: Amino Acid identity matrix help
2.5 years ago by benformatics 4.0k
1
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3
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2.1k
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Comment: Comment: Amino Acid identity matrix help
2.5 years ago by benformatics 4.0k
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1
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2.1k
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Comment: Comment: Amino Acid identity matrix help
2.5 years ago by benformatics 4.0k
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0
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545
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Answer: Answer: Retrieving starting/ending base cordinates and orientations of genes from TAIR u
2.5 years ago by benformatics 4.0k
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0
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998
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Comment: Comment: What's the difference between library diversity and unique molecules?
2.6 years ago by benformatics 4.0k
1
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1
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998
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Answer: Answer: What's the difference between library diversity and unique molecules?
2.6 years ago by benformatics 4.0k
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0
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4.0k
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Comment: Comment: ATAC-seq fragment size distribution - huge spike at 150 bp
2.6 years ago by benformatics 4.0k
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1
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2.2k
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Answer: Answer: Pool or not to pool
2.7 years ago by benformatics 4.0k
1
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0
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14k
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Comment: Comment: Different Ensembl Ids point to the same gene symbol.
2.7 years ago by benformatics 4.0k
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0
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854
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Comment: Comment: igv viewer
2.7 years ago by benformatics 4.0k
0
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1
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4.0k
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Comment: Comment: ATAC-seq fragment size distribution - huge spike at 150 bp
2.7 years ago by benformatics 4.0k
1
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1
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4.0k
views
Answer: Answer: ATAC-seq fragment size distribution - huge spike at 150 bp
2.7 years ago by benformatics 4.0k
1
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0
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842
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Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
2.8 years ago by benformatics 4.0k
0
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1
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2.1k
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Comment: Comment: What do we call a transcript?
2.8 years ago by benformatics 4.0k
1
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2
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2.1k
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Comment: Comment: What do we call a transcript?
2.8 years ago by benformatics 4.0k
4
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0
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1.7k
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Answer: Answer: understanding how cutadapt trims
2.8 years ago by benformatics 4.0k
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2
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1.7k
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Comment: Comment: understanding how cutadapt trims
2.8 years ago by benformatics 4.0k
0
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0
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1.1k
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Answer: Answer: Output splicing for alignment with gff or gtf
2.8 years ago by benformatics 4.0k
1
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0
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608
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Comment: Comment: Validating splice site using protein sequence
2.9 years ago by benformatics 4.0k
1
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0
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9.7k
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Answer: Answer: Adding optional tags to a BAM file
2.9 years ago by benformatics 4.0k
1
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0
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857
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Comment: Comment: Are there Batch effect among different samples?
3.0 years ago by benformatics 4.0k
1
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0
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1.1k
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Comment: Comment: How should I deal with my RNAseq result with high % of mutiple aligned reads?
3.1 years ago by benformatics 4.0k
1
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2
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1.6k
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EBI European Nucleotide Archive (ERA) aspera access broken
elixir ebi ena
updated 3.1 years ago by 20k • written 3.1 years ago by 4.0k
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1
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2.2k
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Comment: Comment: Data Manipulation
3.1 years ago by benformatics 4.0k
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0
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2.2k
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Comment: Comment: Data Manipulation
3.1 years ago by benformatics 4.0k
2
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3
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2.2k
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Answer: Answer: Data Manipulation
3.1 years ago by benformatics 4.0k
1
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1
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826
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Comment: Comment: GC bias in small RNA-seq data
3.1 years ago by benformatics 4.0k
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0
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2.2k
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Answer: Answer: How to quantify piRNAs ?
3.1 years ago by benformatics 4.0k
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0
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744
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Comment: Comment: Mark duplicates the bam files sorted by coordinates
3.2 years ago by benformatics 4.0k
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0
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984
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Comment: Comment: Germline Cancer Mutations
3.2 years ago by benformatics 4.0k
484 results • Page 4 of 10
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