Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
2.4k
views
Answer: Answer: 10x genomics single cell RNA-Seq data submission to GEO
3.5 years ago by benformatics 4.0k
0
votes
0
replies
783
views
Answer: Answer: Genomic Ranges of data from a chromosome
3.6 years ago by benformatics 4.0k
0
votes
1
reply
2.3k
views
Comment: Comment: CPM threshold for RNASeq count data
3.6 years ago by benformatics 4.0k
1
vote
1
reply
3.6k
views
Comment: Comment: how is seurat computing logcounts?
3.6 years ago by benformatics 4.0k
1
vote
0
replies
1.9k
views
Answer: Answer: Scatterplot ggplot: too many overlapping point make an area magnified/ increase
3.6 years ago by benformatics 4.0k
0
votes
1
reply
3.6k
views
Comment: Comment: how is seurat computing logcounts?
3.6 years ago by benformatics 4.0k
3
votes
1
reply
3.6k
views
Answer: Answer: how is seurat computing logcounts?
3.6 years ago by benformatics 4.0k
1
vote
0
replies
3.4k
views
Answer: Answer: Filter SingleCellExperiment object just by one gene expression
3.6 years ago by benformatics 4.0k
0
votes
0
replies
1.3k
views
Comment: Comment: Remove 2nd colon and rest of the values in a dataframe using R/ Unix
3.6 years ago by benformatics 4.0k
1
vote
2
replies
1.3k
views
Answer: Answer: Remove 2nd colon and rest of the values in a dataframe using R/ Unix
3.6 years ago by benformatics 4.0k
0
votes
0
replies
882
views
Comment: Comment: Coverage required for 3' end RNA-seq methods
3.6 years ago by benformatics 4.0k
1
vote
2
replies
882
views
Answer: Answer: Coverage required for 3' end RNA-seq methods
3.6 years ago by benformatics 4.0k
0
votes
0
replies
881
views
Comment: C: Pair ended samples cannot map to the genome
3.8 years ago by benformatics 4.0k
0
votes
0
replies
1.9k
views
Comment: C: Variant calling on RNA-Seq data
3.8 years ago by benformatics 4.0k
3
votes
1
reply
1.9k
views
Answer: A: Variant calling on RNA-Seq data
3.8 years ago by benformatics 4.0k
0
votes
1
reply
1.5k
views
Comment: C: ground truth dataset for BAM read counts
3.8 years ago by benformatics 4.0k
0
votes
1
reply
3.3k
views
Comment: C: Trying to add ensembl_transcript_id using Biomart
3.8 years ago by benformatics 4.0k
0
votes
0
replies
152k
views
Comment: C: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover,
3.9 years ago by benformatics 4.0k
2
votes
0
replies
2.0k
views
Answer: A: Calculating GC content around a specific genomic location
4.0 years ago by benformatics 4.0k
0
votes
0
replies
1.4k
views
Comment: C: Is ENA API down?
4.0 years ago by benformatics 4.0k
0
votes
0
replies
1.1k
views
Comment: C: Get all rows matching to list
4.0 years ago by benformatics 4.0k
1
vote
1
reply
1.1k
views
Answer: A: how to get all rows matching to list in R
4.0 years ago by benformatics 4.0k
0
votes
1
reply
4.2k
views
Comment: C: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
4.0 years ago by benformatics 4.0k
4
votes
1
reply
4.2k
views
Answer: A: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
4.0 years ago by benformatics 4.0k
0
votes
1
reply
3.9k
views
Comment: C: Does trimming RNA-Seq reads affect the differentially expressed genes?
4.1 years ago by benformatics 4.0k
0
votes
1
reply
5.5k
views
Comment: C: Issue installing rmats using conda
4.1 years ago by benformatics 4.0k
0
votes
0
replies
2.2k
views
Comment: C: key lookup changes with AnnotationDbi version
4.1 years ago by benformatics 4.0k
0
votes
0
replies
1.7k
views
Comment: C: How to identify mRNA 3' UTR by bulk RNA-seq data
4.1 years ago by benformatics 4.0k
1
vote
1
reply
2.2k
views
Answer: A: key lookup changes with AnnotationDbi version
4.1 years ago by benformatics 4.0k
11
votes
2
replies
38k
views
Answer: A: ATAC-seq peak calling with MACS
4.1 years ago by benformatics 4.0k
1
vote
1
reply
5.5k
views
Comment: C: Issue installing rmats using conda
4.1 years ago by benformatics 4.0k
1
vote
1
reply
5.5k
views
Answer: A: Issue installing rmats using conda
4.1 years ago by benformatics 4.0k
0
votes
0
replies
1.9k
views
Comment: C: Preventing alignment to new Splice Junctions with STAR
4.1 years ago by benformatics 4.0k
2
votes
2
replies
1.9k
views
Answer: A: Preventing alignment to new Splice Junctions with STAR
4.1 years ago by benformatics 4.0k
2
votes
1
reply
1.9k
views
Answer: C: Keep metadata gc column using GenomicRanges
4.1 years ago by benformatics 4.0k
1
vote
0
replies
3.9k
views
Comment: C: Does trimming RNA-Seq reads affect the differentially expressed genes?
4.1 years ago by benformatics 4.0k
0
votes
0
replies
7.8k
views
Comment: C: bed file indexing problem
4.1 years ago by benformatics 4.0k
0
votes
1
reply
3.0k
views
Comment: C: STAR index file for GRCH37
4.2 years ago by benformatics 4.0k
0
votes
0
replies
3.0k
views
Comment: C: STAR index file for GRCH37
4.2 years ago by benformatics 4.0k
1
vote
1
reply
3.0k
views
Comment: C: STAR index file for GRCH37
4.2 years ago by benformatics 4.0k
0
votes
0
replies
972
views
Comment: C: findOverlapofPeaks discrepancy in peaklist vs Venn diagram
4.2 years ago by benformatics 4.0k
0
votes
0
replies
2.6k
views
Comment: C: genomeGenerate: exiting because of *OUTPUT FILE* error: could not create output
4.3 years ago by benformatics 4.0k
4
votes
0
replies
59k
views
Comment: Comment: How To Write Data In A Granges Object To A Bed File.
2.7 years ago by benformatics 4.0k
0
votes
0
replies
1.5k
views
Comment: C: Collapse mapped reads in sorted bam file based on the start and end position coo
4.3 years ago by benformatics 4.0k
0
votes
0
replies
885
views
Comment: C: bowtie2 alignment summary and mapping problems
4.3 years ago by benformatics 4.0k
3
votes
1
reply
3.1k
views
Answer: A: Which is the proper RNA-seq count table transformation to perform hierarchial cl
4.3 years ago by benformatics 4.0k
0
votes
0
replies
1.3k
views
Comment: C: Exome variants limited only to the first half of a gene? Technical error?
4.3 years ago by benformatics 4.0k
1
vote
0
replies
1.3k
views
Comment: C: Exome variants limited only to the first half of a gene? Technical error?
4.3 years ago by benformatics 4.0k
1
vote
0
replies
1.4k
views
Comment: C: Trimmomatic on NEBNext Ultra II FS DNA
4.3 years ago by benformatics 4.0k
2
votes
1
reply
1.3k
views
Comment: C: Exome variants limited only to the first half of a gene? Technical error?
4.3 years ago by benformatics 4.0k
484 results • Page 6 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6