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1
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Comment: Comment: Concatenating fastq for the same sample or doing it separately and merge at the
18 months ago by jomo018 ▴ 730
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1.9k
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Comment: Comment: Encode project signal p-value
18 months ago by jomo018 ▴ 730
4
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3
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1.9k
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Encode project signal p-value
ChiP-Seq p-value Encode signal
updated 18 months ago by ★ 1.3k • written 18 months ago by ▴ 730
1
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11
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4.1k
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bedtools fisher interpretation of "in -a" "not in -b"
fisher bedtools intersection
updated 21 months ago by 44k • written 6.8 years ago by ▴ 730
1
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1
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1.2k
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min.cells in CreateSeuratObject
Seurat
updated 22 months ago by 13k • written 22 months ago by ▴ 730
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1.7k
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Comment: Comment: cellranger count aggregated to transcripts
3.3 years ago by jomo018 ▴ 730
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4
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1.7k
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cellranger count aggregated to transcripts
cellranger gtf 10x
updated 3.3 years ago by 4.0k • written 3.3 years ago by ▴ 730
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3.2k
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Answer: A: "Idents" can not be use in seurat
4.3 years ago by jomo018 ▴ 730
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5.4k
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Comment: C: A list of human cell cycle genes for Seurat
4.4 years ago by jomo018 ▴ 730
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17k
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Comment: C: type='apeglm' shrinkage only for use with 'coef'
4.4 years ago by jomo018 ▴ 730
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1
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2.5k
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Comment: C: Question: can not obtain DESeq2 results
4.4 years ago by jomo018 ▴ 730
1
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6.5k
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Comment: C: Classic threshold for log2 fold change in RNA-seq experiment
4.4 years ago by jomo018 ▴ 730
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1
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3.7k
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Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
4.4 years ago by jomo018 ▴ 730
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0
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3.7k
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Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
4.4 years ago by jomo018 ▴ 730
3
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2
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3.7k
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Answer: A: Deterimining overall number of differentially expressed genes between WT and KO
4.4 years ago by jomo018 ▴ 730
0
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0
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8.2k
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Comment: C: Relative variance in PCA of scaled data of scRNA-Seq
4.4 years ago by jomo018 ▴ 730
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9.0k
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Comment: C: Remove ensembl identifiers from Seurat
4.4 years ago by jomo018 ▴ 730
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0
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9.0k
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Comment: C: Remove ensembl identifiers from Seurat
4.4 years ago by jomo018 ▴ 730
0
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2
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8.2k
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Comment: C: Relative variance in PCA of scaled data of scRNA-Seq
4.4 years ago by jomo018 ▴ 730
0
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1
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9.0k
views
Answer: A: Remove ensembl identifiers from Seurat
4.4 years ago by jomo018 ▴ 730
1
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5
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8.2k
views
Relative variance in PCA of scaled data of scRNA-Seq
variance scRNA-Seq Seurat PCA
4.4 years ago by jomo018 ▴ 730
0
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0
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4.2k
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Comment: C: Statistical test for overlap
4.4 years ago by jomo018 ▴ 730
1
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1
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2.2k
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Comment: C: Seurat FeaturePlot across stims
4.5 years ago by jomo018 ▴ 730
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1
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2.0k
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Seurat integrated analysis - methods for cell-type specific responses
RNA-Seq Single-Cell differential-expression
4.6 years ago by jomo018 ▴ 730
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0
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9.7k
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Comment: C: GSEA PreRanked lists from DESeq2 results table
4.8 years ago by jomo018 ▴ 730
2
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1
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9.7k
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Answer: A: GSEA PreRanked lists from DESeq2 results table
4.8 years ago by jomo018 ▴ 730
3
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1
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16k
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Answer: A: Illumina paired-end reads R1 and R2 mixed together?
5.0 years ago by jomo018 ▴ 730
2
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1
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1.6k
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Answer: C: RRBS analysis using methylkit with 2 variables
5.0 years ago by jomo018 ▴ 730
5
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1
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8.2k
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Answer: C: Maths implications: log2 transformation before or after normalisation
5.1 years ago by jomo018 ▴ 730
1
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1
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2.3k
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Comment: C: RNAseq differential expression analysis : no significative FDR but significative
5.1 years ago by jomo018 ▴ 730
0
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0
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3.6k
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Comment: C: DESeq2: (1) Comparing multiple groups using a for loop & (2) normalization of ti
5.1 years ago by jomo018 ▴ 730
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1
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1.8k
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Comment: C: subsetting matrix elements and creating a histogram
5.1 years ago by jomo018 ▴ 730
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1
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1.8k
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Comment: C: subsetting matrix elements and creating a histogram
5.1 years ago by jomo018 ▴ 730
0
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1
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1.7k
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Comment: C: RRBS Methylation integration with RNA-seq differential expression
5.4 years ago by jomo018 ▴ 730
15
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31
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14k
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6 follow
De-duplicate UMI at FASTQ level
UMI fastq
updated 5.9 years ago by ▴ 50 • written 6.1 years ago by ▴ 730
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3.9k
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Comment: C: FASTQ alignment result is really bad
6.0 years ago by jomo018 ▴ 730
1
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0
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6.5k
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Comment: C: log vs square-root transformation
6.0 years ago by jomo018 ▴ 730
0
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0
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2.4k
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Comment: C: salmon - tximport - deseq2 gene level workflow
6.0 years ago by jomo018 ▴ 730
0
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2
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2.4k
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salmon - tximport - deseq2 gene level workflow
RNA-Seq salmon deseq2 tximport
6.0 years ago by jomo018 ▴ 730
1
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0
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4.9k
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Answer: A: How to extract unique values between columns in R ?
6.1 years ago by jomo018 ▴ 730
0
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0
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3.1k
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Comment: C: Mouse Enhancers Database/ Mouse Enhancer annotation
6.1 years ago by jomo018 ▴ 730
0
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0
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3.1k
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Answer: A: Mouse Enhancers Database/ Mouse Enhancer annotation
6.1 years ago by jomo018 ▴ 730
0
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3
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14k
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Answer: C: TypeError: 'str' object is not callable
updated 6.1 years ago by 44k • written 6.1 years ago by ▴ 730
0
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0
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4.8k
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Comment: C: Error using bedtools "intersect" command
6.1 years ago by jomo018 ▴ 730
1
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1
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4.8k
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Comment: C: Error using bedtools "intersect" command
6.1 years ago by jomo018 ▴ 730
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1
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4.8k
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Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
6.1 years ago by jomo018 ▴ 730
1
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0
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4.3k
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Comment: C: Salmon error message
6.1 years ago by jomo018 ▴ 730
5
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0
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143k
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Answer: A: Fold change - a final explanation
6.1 years ago by jomo018 ▴ 730
2
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0
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12k
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Answer: A: giving a color to null values on heatmap2
6.2 years ago by jomo018 ▴ 730
1
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1
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4.5k
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Comment: C: Illegal Division by zero
6.2 years ago by jomo018 ▴ 730
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