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0
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325
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Answer: Answer: help with germline analysis using cnvkit
16 days ago by Eric T. ★ 2.8k
1
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0
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333
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Answer: Answer: CNVKit batch output
16 days ago by Eric T. ★ 2.8k
0
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0
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912
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Answer: Answer: annotate CNVkit output
2.3 years ago by Eric T. ★ 2.8k
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0
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842
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Answer: Answer: CNVKit on targeted amplicons with UMIs
2.3 years ago by Eric T. ★ 2.8k
1
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0
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727
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Answer: Answer: CNVkit background(Noise)
2.3 years ago by Eric T. ★ 2.8k
2
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0
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1.1k
views
Answer: Answer: The exonix length calculated from the CNVkit bed files is several fold larger th
2.3 years ago by Eric T. ★ 2.8k
0
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0
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2.9k
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Comment: C: I got a problem with making normal reference using cnvkit
3.8 years ago by Eric T. ★ 2.8k
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0
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878
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Answer: A: CNVKit sex specification in controls pool
3.8 years ago by Eric T. ★ 2.8k
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0
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1.1k
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Comment: C: CNVkit bwa-mem parameters
3.8 years ago by Eric T. ★ 2.8k
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0
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1.1k
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Answer: A: CNVkit bwa-mem parameters
3.9 years ago by Eric T. ★ 2.8k
0
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1
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4.8k
views
Answer: A: CNVKit noisy scatter plot
4.6 years ago by Eric T. ★ 2.8k
4
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4
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3.4k
views
Tool: CNVkit, robust genome-wide copy number detection from DNA sequencing
SV CNV CNVkit Python
updated 23 months ago by 44k • written 9.4 years ago by ★ 2.8k
2
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1
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2.3k
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Answer: A: Calling CNA from aCGH: Thresholding?
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.8k
0
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1
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4.7k
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Comment: C: CNVkit runtime for WGS?
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.8k
3
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1
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11k
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Answer: Answer: ABSOLUTE to estimate tumour purity from WES data
updated 23 months ago by 44k • written 8.8 years ago by ★ 2.8k
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0
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3.2k
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Answer: A: Using io.StringIO() with biopython Phylo parse
updated 4.9 years ago by 44k • written 8.8 years ago by ★ 2.8k
0
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0
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4.5k
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Answer: A: Germline CNV caller
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.8k
4
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0
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3.7k
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Answer: A: Regarding Pseudokinases
updated 5.2 years ago by 44k • written 13.1 years ago by ★ 2.8k
1
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0
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5.2k
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Comment: C: Phylip (->Prodist) Command Line Wrapper In Biopython
updated 5.3 years ago by 44k • written 14.5 years ago by ★ 2.8k
0
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0
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1.3k
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Comment: C: CNVkit - diagram problem
5.3 years ago by Eric T. ★ 2.8k
0
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1
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3.6k
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Answer: A: CNVKIT - unable to produce scatter and diagram pdfs
5.3 years ago by Eric T. ★ 2.8k
2
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1
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1.5k
views
Comment: C: Noisy CNV background in old FFPE sample
5.4 years ago by Eric T. ★ 2.8k
1
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0
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5.8k
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Answer: A: UK Biobank reference genome?
5.4 years ago by Eric T. ★ 2.8k
3
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1
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1.6k
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Answer: A: UK Biobank l2r data holds segment means but no segment locations?
5.4 years ago by Eric T. ★ 2.8k
1
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0
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1.7k
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Answer: A: CNV analysis for tumor panel
5.4 years ago by Eric T. ★ 2.8k
0
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0
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1.3k
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Answer: A: CNVkit - diagram problem
5.4 years ago by Eric T. ★ 2.8k
0
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0
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3.6k
views
Comment: C: CNVKIT - unable to produce scatter and diagram pdfs
5.4 years ago by Eric T. ★ 2.8k
1
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2
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1.5k
views
Answer: A: Noisy CNV background in old FFPE sample
5.4 years ago by Eric T. ★ 2.8k
1
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1
reply
2.1k
views
Answer: A: Weights in cnvkit cnr output
5.4 years ago by Eric T. ★ 2.8k
2
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1
reply
3.0k
views
Answer: A: cnvkit bgzf_read error 4 after 4 bytes
5.4 years ago by Eric T. ★ 2.8k
1
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0
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1.3k
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Answer: A: No CNV calls in CNVkit import-rna
5.6 years ago by Eric T. ★ 2.8k
0
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0
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2.9k
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Comment: C: I got a problem with making normal reference using cnvkit
5.6 years ago by Eric T. ★ 2.8k
0
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0
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3.4k
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Comment: C: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
5.6 years ago by Eric T. ★ 2.8k
0
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1
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3.4k
views
Comment: C: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
5.6 years ago by Eric T. ★ 2.8k
4
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2
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3.3k
views
Answer: A: CNVkit for somatic copy number detection
5.6 years ago by Eric T. ★ 2.8k
0
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2
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2.9k
views
Answer: A: I got a problem with making normal reference using cnvkit
5.6 years ago by Eric T. ★ 2.8k
0
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0
replies
1.5k
views
Comment: C: CNVkit- weird results when using the same sample as normal
5.6 years ago by Eric T. ★ 2.8k
0
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0
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3.1k
views
Comment: C: scatter plots with single chromosome gives IndexError
5.6 years ago by Eric T. ★ 2.8k
0
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0
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3.1k
views
Answer: A: scatter plots with single chromosome gives IndexError
5.6 years ago by Eric T. ★ 2.8k
0
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1
reply
3.4k
views
Answer: A: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
5.7 years ago by Eric T. ★ 2.8k
1
vote
1
reply
1.5k
views
Answer: A: CNVkit- weird results when using the same sample as normal
5.7 years ago by Eric T. ★ 2.8k
1
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0
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3.0k
views
Comment: C: CNVkit: Dealing with noisy tumor samples
5.7 years ago by Eric T. ★ 2.8k
1
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0
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1.4k
views
Answer: A: Filtering number of markers after segmentation using DNAcopy
5.8 years ago by Eric T. ★ 2.8k
0
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1
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3.0k
views
Answer: A: CNVkit: Dealing with noisy tumor samples
5.8 years ago by Eric T. ★ 2.8k
0
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0
replies
1.8k
views
Answer: A: CNVkit Heatmap samples clustering
5.8 years ago by Eric T. ★ 2.8k
0
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1
reply
2.2k
views
Answer: A: Error in CNV Calling with Annotation
5.8 years ago by Eric T. ★ 2.8k
0
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1
reply
2.4k
views
Answer: A: Bootstrap function biopython
5.9 years ago by Eric T. ★ 2.8k
1
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0
replies
2.5k
views
Answer: A: CNV calling from exome sequencing data with a low number of samples
6.2 years ago by Eric T. ★ 2.8k
0
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1
reply
7.0k
views
Comment: C: CNVkit for germline samples
6.2 years ago by Eric T. ★ 2.8k
0
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2
replies
7.0k
views
Comment: C: CNVkit for germline samples
6.2 years ago by Eric T. ★ 2.8k
258 results • Page 1 of 6
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