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0
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456
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Answer: Answer: help with germline analysis using cnvkit
5 months ago by Eric T. ★ 2.8k
1
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0
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543
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Answer: Answer: CNVKit batch output
5 months ago by Eric T. ★ 2.8k
0
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0
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1.1k
views
Answer: Answer: annotate CNVkit output
2.6 years ago by Eric T. ★ 2.8k
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0
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1.0k
views
Answer: Answer: CNVKit on targeted amplicons with UMIs
2.6 years ago by Eric T. ★ 2.8k
1
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0
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845
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Answer: Answer: CNVkit background(Noise)
2.6 years ago by Eric T. ★ 2.8k
2
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0
replies
1.2k
views
Answer: Answer: The exonix length calculated from the CNVkit bed files is several fold larger th
2.6 years ago by Eric T. ★ 2.8k
0
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0
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3.1k
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Comment: C: I got a problem with making normal reference using cnvkit
4.2 years ago by Eric T. ★ 2.8k
0
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0
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1.0k
views
Answer: A: CNVKit sex specification in controls pool
4.2 years ago by Eric T. ★ 2.8k
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0
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1.3k
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Comment: C: CNVkit bwa-mem parameters
4.2 years ago by Eric T. ★ 2.8k
0
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0
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1.3k
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Answer: A: CNVkit bwa-mem parameters
4.3 years ago by Eric T. ★ 2.8k
0
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1
reply
5.4k
views
Answer: A: CNVKit noisy scatter plot
4.9 years ago by Eric T. ★ 2.8k
4
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4
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3.5k
views
Tool: CNVkit, robust genome-wide copy number detection from DNA sequencing
SV CNV CNVkit Python
updated 2.3 years ago by 45k • written 9.8 years ago by ★ 2.8k
2
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1
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2.5k
views
Answer: A: Calling CNA from aCGH: Thresholding?
updated 5.3 years ago by 45k • written 9.2 years ago by ★ 2.8k
0
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1
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5.0k
views
Comment: C: CNVkit runtime for WGS?
updated 5.3 years ago by 45k • written 9.2 years ago by ★ 2.8k
3
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1
reply
11k
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Answer: Answer: ABSOLUTE to estimate tumour purity from WES data
updated 2.3 years ago by 45k • written 9.2 years ago by ★ 2.8k
0
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0
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3.5k
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Answer: A: Using io.StringIO() with biopython Phylo parse
updated 5.3 years ago by 45k • written 9.2 years ago by ★ 2.8k
0
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0
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4.6k
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Answer: A: Germline CNV caller
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 2.8k
4
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0
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3.9k
views
Answer: A: Regarding Pseudokinases
updated 5.6 years ago by 45k • written 13.4 years ago by ★ 2.8k
1
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0
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5.4k
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Comment: C: Phylip (->Prodist) Command Line Wrapper In Biopython
updated 5.7 years ago by 45k • written 14.9 years ago by ★ 2.8k
0
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0
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1.5k
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Comment: C: CNVkit - diagram problem
5.7 years ago by Eric T. ★ 2.8k
0
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1
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4.1k
views
Answer: A: CNVKIT - unable to produce scatter and diagram pdfs
5.7 years ago by Eric T. ★ 2.8k
2
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1
reply
1.7k
views
Comment: C: Noisy CNV background in old FFPE sample
5.7 years ago by Eric T. ★ 2.8k
1
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0
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6.1k
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Answer: A: UK Biobank reference genome?
5.7 years ago by Eric T. ★ 2.8k
3
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1
reply
1.8k
views
Answer: A: UK Biobank l2r data holds segment means but no segment locations?
5.7 years ago by Eric T. ★ 2.8k
1
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0
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1.9k
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Answer: A: CNV analysis for tumor panel
5.7 years ago by Eric T. ★ 2.8k
0
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0
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1.5k
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Answer: A: CNVkit - diagram problem
5.7 years ago by Eric T. ★ 2.8k
0
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0
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4.1k
views
Comment: C: CNVKIT - unable to produce scatter and diagram pdfs
5.7 years ago by Eric T. ★ 2.8k
1
vote
2
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1.7k
views
Answer: A: Noisy CNV background in old FFPE sample
5.7 years ago by Eric T. ★ 2.8k
1
vote
1
reply
2.3k
views
Answer: A: Weights in cnvkit cnr output
5.7 years ago by Eric T. ★ 2.8k
2
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1
reply
3.3k
views
Answer: A: cnvkit bgzf_read error 4 after 4 bytes
5.7 years ago by Eric T. ★ 2.8k
1
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0
replies
1.4k
views
Answer: A: No CNV calls in CNVkit import-rna
6.0 years ago by Eric T. ★ 2.8k
0
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0
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3.1k
views
Comment: C: I got a problem with making normal reference using cnvkit
6.0 years ago by Eric T. ★ 2.8k
0
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0
replies
3.7k
views
Comment: C: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
6.0 years ago by Eric T. ★ 2.8k
0
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1
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3.7k
views
Comment: C: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
6.0 years ago by Eric T. ★ 2.8k
4
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2
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3.6k
views
Answer: A: CNVkit for somatic copy number detection
6.0 years ago by Eric T. ★ 2.8k
0
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2
replies
3.1k
views
Answer: A: I got a problem with making normal reference using cnvkit
6.0 years ago by Eric T. ★ 2.8k
0
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0
replies
1.7k
views
Comment: C: CNVkit- weird results when using the same sample as normal
6.0 years ago by Eric T. ★ 2.8k
0
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0
replies
3.3k
views
Comment: C: scatter plots with single chromosome gives IndexError
6.0 years ago by Eric T. ★ 2.8k
0
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0
replies
3.3k
views
Answer: A: scatter plots with single chromosome gives IndexError
6.0 years ago by Eric T. ★ 2.8k
0
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1
reply
3.7k
views
Answer: A: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
6.1 years ago by Eric T. ★ 2.8k
1
vote
1
reply
1.7k
views
Answer: A: CNVkit- weird results when using the same sample as normal
6.1 years ago by Eric T. ★ 2.8k
1
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0
replies
3.3k
views
Comment: C: CNVkit: Dealing with noisy tumor samples
6.1 years ago by Eric T. ★ 2.8k
1
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0
replies
1.5k
views
Answer: A: Filtering number of markers after segmentation using DNAcopy
6.2 years ago by Eric T. ★ 2.8k
0
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1
reply
3.3k
views
Answer: A: CNVkit: Dealing with noisy tumor samples
6.2 years ago by Eric T. ★ 2.8k
0
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0
replies
2.0k
views
Answer: A: CNVkit Heatmap samples clustering
6.2 years ago by Eric T. ★ 2.8k
0
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1
reply
2.4k
views
Answer: A: Error in CNV Calling with Annotation
6.2 years ago by Eric T. ★ 2.8k
0
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1
reply
2.5k
views
Answer: A: Bootstrap function biopython
6.3 years ago by Eric T. ★ 2.8k
1
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0
replies
2.7k
views
Answer: A: CNV calling from exome sequencing data with a low number of samples
6.5 years ago by Eric T. ★ 2.8k
0
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1
reply
7.6k
views
Comment: C: CNVkit for germline samples
6.6 years ago by Eric T. ★ 2.8k
0
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2
replies
7.6k
views
Comment: C: CNVkit for germline samples
6.6 years ago by Eric T. ★ 2.8k
258 results • Page 1 of 6
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