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7.0k
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Answer: A: CNVkit for germline samples
6.2 years ago by Eric T. ★ 2.8k
1
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1
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1.9k
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Answer: A: BioPython, PhyloXML and duplication nodes
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 2.8k
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0
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1.5k
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Answer: A: Copy number variant from SNP array
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 2.8k
8
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2
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12k
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Answer: A: Help with understanding CNVkit output
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 2.8k
2
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1
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8.1k
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Answer: A: Reproducible Research: A More General Sweave?
updated 6.2 years ago by 44k • written 10.0 years ago by ★ 2.8k
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Answer: A: Running cnvkit batch with -y parameter
6.3 years ago by Eric T. ★ 2.8k
1
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0
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1.3k
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Answer: A: Best variant caller for CNVkit
6.3 years ago by Eric T. ★ 2.8k
0
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0
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1.8k
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Comment: C: CNVkit: gene results not in output
6.4 years ago by Eric T. ★ 2.8k
1
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1
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1.8k
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Answer: A: CNVkit: gene results not in output
6.4 years ago by Eric T. ★ 2.8k
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2
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3.0k
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Answer: A: minus integer copy number when using --purity for cnvkit
6.5 years ago by Eric T. ★ 2.8k
2
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0
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1.7k
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Answer: A: Using CNVkit to identify poor-quality normal samples
6.5 years ago by Eric T. ★ 2.8k
0
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0
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2.0k
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Answer: A: Is there a way to plot both tumor and normal samples' copy number segments on t
6.6 years ago by Eric T. ★ 2.8k
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0
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1.5k
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Comment: C: CNV details about the normal samples?
6.6 years ago by Eric T. ★ 2.8k
1
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1
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1.7k
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Answer: A: a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
6.7 years ago by Eric T. ★ 2.8k
2
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1
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4.4k
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Answer: A: CNV detection using BAM file
6.7 years ago by Eric T. ★ 2.8k
1
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0
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1.8k
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Answer: A: Detect exon deletion/duplication from NGS amplicon
6.7 years ago by Eric T. ★ 2.8k
2
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0
replies
2.0k
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Answer: A: How to use DNAcopy package to analyze Affymetrix SNP array?
6.8 years ago by Eric T. ★ 2.8k
0
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0
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1.6k
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Answer: A: CNVkit segmetrics error
6.8 years ago by Eric T. ★ 2.8k
1
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0
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2.5k
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Answer: A: WGS coverage (depth) for CNV detection
6.8 years ago by Eric T. ★ 2.8k
0
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0
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5.2k
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Comment: C: CNVkit : small CNV calling
6.8 years ago by Eric T. ★ 2.8k
0
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0
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3.9k
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Comment: C: Using THETA2 from CNVkit: what king of vcf do you need?
6.8 years ago by Eric T. ★ 2.8k
2
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0
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2.6k
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Answer: A: Regarding Cnvkit analysis
6.8 years ago by Eric T. ★ 2.8k
1
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1
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3.9k
views
Comment: C: CNVkit - how many normal samples do I need for the pooled normal reference?
6.8 years ago by Eric T. ★ 2.8k
0
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1
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3.4k
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Comment: C: tumor/normal WGS with CNVkit has many small segments with small copy number chan
6.8 years ago by Eric T. ★ 2.8k
2
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1
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3.9k
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Answer: A: CNVkit - how many normal samples do I need for the pooled normal reference?
6.8 years ago by Eric T. ★ 2.8k
0
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0
replies
1.4k
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Answer: A: CNVKit - Gene labels in 'diagram'
6.8 years ago by Eric T. ★ 2.8k
1
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1
reply
5.7k
views
Answer: A: visualize CNV data based on WGS
6.9 years ago by Eric T. ★ 2.8k
1
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1
reply
3.4k
views
Answer: A: tumor/normal WGS with CNVkit has many small segments with small copy number chan
6.9 years ago by Eric T. ★ 2.8k
2
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1
reply
4.4k
views
Answer: A: CNVKIT import errors
6.9 years ago by Eric T. ★ 2.8k
1
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0
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1.4k
views
Answer: A: Any techniques faster than Breakdancer?
7.0 years ago by Eric T. ★ 2.8k
2
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1
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7.1k
views
Comment: C: Publicly Available Tumor/Normal Illumina Data For Evaluation Of Somatic Variant
7.0 years ago by Eric T. ★ 2.8k
1
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1
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3.5k
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Answer: A: How to merge CNV of multiple samples from CNVkit
7.0 years ago by Eric T. ★ 2.8k
0
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0
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1.8k
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Comment: C: cnvkit segmetrics on multiple files
7.0 years ago by Eric T. ★ 2.8k
0
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0
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8.1k
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Comment: C: What does it mean to say "b-allele frequency"?
7.0 years ago by Eric T. ★ 2.8k
2
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1
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3.2k
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Answer: A: WES germline CNV caller for trio analysis
7.0 years ago by Eric T. ★ 2.8k
0
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0
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1.8k
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Answer: A: cnvkit segmetrics on multiple files
7.1 years ago by Eric T. ★ 2.8k
0
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0
replies
1.7k
views
Answer: A: Is cnvkit coverage output split into non-overlapping segments?
7.1 years ago by Eric T. ★ 2.8k
0
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0
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2.8k
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Answer: A: Precision of loss of heterozygosity detection with Sanger sequencing vs copy num
7.2 years ago by Eric T. ★ 2.8k
0
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2
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7.0k
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Comment: C: CNVkit for germline samples
7.2 years ago by Eric T. ★ 2.8k
1
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1
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1.9k
views
Answer: A: CNV calling on tumor sample with no germline counterpart
7.2 years ago by Eric T. ★ 2.8k
3
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2
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2.7k
views
Answer: A: Best CNV caller for Illumina WGRS data, in order to compare two phenotypes
7.2 years ago by Eric T. ★ 2.8k
0
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1
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7.0k
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Comment: C: CNVkit for germline samples
7.2 years ago by Eric T. ★ 2.8k
0
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1
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7.0k
views
Comment: C: CNVkit for germline samples
7.2 years ago by Eric T. ★ 2.8k
1
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0
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4.6k
views
Answer: A: I need allele copy number information for running PyClone
7.2 years ago by Eric T. ★ 2.8k
0
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0
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2.7k
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Answer: A: cvnkit: what is the problem here?
7.2 years ago by Eric T. ★ 2.8k
0
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0
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6.8k
views
Comment: C: How to import the output of CNVkit into GISTIC2.0 ?
7.2 years ago by Eric T. ★ 2.8k
0
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0
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7.0k
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Comment: C: CNVkit for germline samples
7.2 years ago by Eric T. ★ 2.8k
2
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2
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6.8k
views
Answer: A: How to import the output of CNVkit into GISTIC2.0 ?
7.2 years ago by Eric T. ★ 2.8k
1
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0
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4.1k
views
Answer: A: Structural Variant annotation
7.2 years ago by Eric T. ★ 2.8k
1
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1
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1.8k
views
Answer: A: Error due to annotation file while running target module from CNVkit tool
7.3 years ago by Eric T. ★ 2.8k
258 results • Page 2 of 6
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