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Answer: A: amplicon based germline CNV caller
7.3 years ago by Eric T. ★ 2.8k
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2.5k
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Answer: A: Using CNVkit for hybrid capture data -- the huge CNV regions in results does not
7.3 years ago by Eric T. ★ 2.8k
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Answer: A: How to get the range of LOH?
7.3 years ago by Eric T. ★ 2.8k
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Comment: C: calling the CNV in tumor-only samples (WGS and WES)
7.3 years ago by Eric T. ★ 2.8k
1
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2.4k
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Answer: A: Understanding Weight column in .cns files in cnvkit
7.3 years ago by Eric T. ★ 2.8k
1
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1
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3.6k
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Answer: A: calling the CNV in tumor-only samples (WGS and WES)
7.3 years ago by Eric T. ★ 2.8k
3
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2.1k
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Answer: A: Problems using cnvkit for ctDNA targeted sequencing
7.4 years ago by Eric T. ★ 2.8k
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5.2k
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Comment: C: CNVkit : small CNV calling
7.4 years ago by Eric T. ★ 2.8k
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2.6k
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Answer: A: CNVkit GRCh38 tumor-normal pair
7.4 years ago by Eric T. ★ 2.8k
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1.4k
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Answer: A: Recurrent Segmentation Errors
7.4 years ago by Eric T. ★ 2.8k
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3.5k
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Answer: A: "Shifted" copy number ratios coming from cnvkit?
7.4 years ago by Eric T. ★ 2.8k
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1.7k
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Answer: A: Question about run cnvkit on DNAnexus
7.4 years ago by Eric T. ★ 2.8k
2
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3.1k
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Answer: A: CNV detection of single cell genome sequencing
7.4 years ago by Eric T. ★ 2.8k
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1
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8.1k
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Answer: A: What is probe number and segmentation mean in copy number variation(CNV) data
7.5 years ago by Eric T. ★ 2.8k
3
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2.4k
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Answer: A: Using cnvkit for targeted amplicon sequencing
7.5 years ago by Eric T. ★ 2.8k
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3.1k
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Comment: C: CNVkit - creating a reference panel from 'normal' parts of tumour bams
7.5 years ago by Eric T. ★ 2.8k
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1
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3.9k
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Comment: C: Using THETA2 from CNVkit: what king of vcf do you need?
7.5 years ago by Eric T. ★ 2.8k
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Job: Scientific Applications Programmer at UCSF Clinical Cancer Genomics Lab
cancer sequencing python cloud
updated 19 months ago by 44k • written 7.5 years ago by ★ 2.8k
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Comment: C: Scientific Applications Programmer at UCSF Clinical Cancer Genomics Lab
7.5 years ago by Eric T. ★ 2.8k
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0
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3.1k
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Answer: A: Are there NGS-based CNV callers that utilise allele frequency?
7.5 years ago by Eric T. ★ 2.8k
0
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1.6k
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Answer: A: CNVKIT scatter --range-list
7.5 years ago by Eric T. ★ 2.8k
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2.8k
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Comment: C: cnvkit , antitarget , cn , call cnv
7.6 years ago by Eric T. ★ 2.8k
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3.9k
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Comment: C: Using THETA2 from CNVkit: what king of vcf do you need?
7.6 years ago by Eric T. ★ 2.8k
0
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2.8k
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Answer: A: cnvkit , antitarget , cn , call cnv
7.6 years ago by Eric T. ★ 2.8k
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1.7k
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Answer: A: PSCBS segmentation file header
7.6 years ago by Eric T. ★ 2.8k
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2
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3.9k
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Answer: A: Using THETA2 from CNVkit: what king of vcf do you need?
7.6 years ago by Eric T. ★ 2.8k
2
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0
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4.1k
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Answer: A: CNVkit reference.cnn .cnr .cns log ratio
7.6 years ago by Eric T. ★ 2.8k
2
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0
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3.4k
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Answer: A: Log 2 in CNV
7.6 years ago by Eric T. ★ 2.8k
2
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0
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2.2k
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Answer: A: how to determine the controls for cnv
7.6 years ago by Eric T. ★ 2.8k
0
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1
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3.6k
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Answer: A: reroot at any possible node in ete or with any other python
7.7 years ago by Eric T. ★ 2.8k
3
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0
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5.1k
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Answer: A: Copy Number Variation Tools
7.7 years ago by Eric T. ★ 2.8k
1
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0
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2.3k
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Answer: A: Explications about call function of CNVkit
7.7 years ago by Eric T. ★ 2.8k
0
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1
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18k
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Answer: A: Module to RMSD two proteins with Python?
7.8 years ago by Eric T. ★ 2.8k
1
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1
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3.9k
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Answer: A: Error 1: NULL byte detected when trying to segment by PSCBS
7.8 years ago by Eric T. ★ 2.8k
6
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4.6k
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Answer: A: How is the "weight" calculated by CNVkit ?
7.8 years ago by Eric T. ★ 2.8k
0
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0
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3.7k
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Answer: A: How to convert my files(cnv seg, refseq) to .bed format ?
7.8 years ago by Eric T. ★ 2.8k
4
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2
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4.1k
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Answer: A: CNVkit Segments vs Bins
7.8 years ago by Eric T. ★ 2.8k
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1
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5.8k
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Comment: C: estimating tumor purity and ploidy and CNV
7.8 years ago by Eric T. ★ 2.8k
1
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1
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5.8k
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Comment: C: estimating tumor purity and ploidy and CNV
7.8 years ago by Eric T. ★ 2.8k
3
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5.8k
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Answer: A: estimating tumor purity and ploidy and CNV
7.8 years ago by Eric T. ★ 2.8k
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3.7k
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Answer: A: How to export CNVkit results into PyClone?
7.8 years ago by Eric T. ★ 2.8k
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1
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2.0k
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Answer: A: No call for exomes analysis
7.8 years ago by Eric T. ★ 2.8k
2
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2.0k
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Answer: A: No call for exomes analysis
7.8 years ago by Eric T. ★ 2.8k
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2.5k
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Answer: A: Detection of fusion from a DNA seq file
7.8 years ago by Eric T. ★ 2.8k
2
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0
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1.4k
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Answer: A: CNVkit plotting tumor + healthy individuals
7.9 years ago by Eric T. ★ 2.8k
1
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0
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3.7k
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Answer: A: How to add a legend to the heatmap?
7.9 years ago by Eric T. ★ 2.8k
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1
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2.4k
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Comment: C: Understanding coverage command
7.9 years ago by Eric T. ★ 2.8k
1
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1
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2.4k
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Answer: A: Understanding coverage command
7.9 years ago by Eric T. ★ 2.8k
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0
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2.6k
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Answer: A: Draw centromere on chromosome scatter plot
7.9 years ago by Eric T. ★ 2.8k
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0
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1.8k
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Answer: A: CNVkit and Ion Torrent Data - Targeted Sequencing
7.9 years ago by Eric T. ★ 2.8k
258 results • Page 3 of 6
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